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The map label for this gene is ydfH [H]

Identifier: 13475658

GI number: 13475658

Start: 5581446

End: 5582120

Strand: Reverse

Name: ydfH [H]

Synonym: mll6782

Alternate gene names: 13475658

Gene position: 5582120-5581446 (Counterclockwise)

Preceding gene: 13475659

Following gene: 13475656

Centisome position: 79.34

GC content: 64.3

Gene sequence:

>675_bases
ATGGACCTGGATCCTTCGACGCTCAATCGGGCGCTGCCGCTCCGCGATCAAATCTATCACAAGATCCGTAATCTGATTGT
CGTTGGCCAGTTGAAGCCGGGGGAAGTCATCAACGAGGTGGCGATCGCCGAAGCCCTTGGGGTTTCGCGCACCCCGGTGC
GGGAAGCAGTCAAGCGCATCAGCGACGAAGGCCTGGTGAAGATCCTGGCACAGACCGGCACCTATGTCGCGCCGATCAGC
CGCGCCGACCTGGAAGAAGCCTATGTCATCCGCCGGGCGCTCGAGATGGAAAGCGCCAGGCGCGCCGCCGCCAAGCTGAC
CCCGGCATCCGCCGAACTGCTGGAGGACAACATGGCGGCGCACAAGCTCGCCATCTCGCGCGGCCGGTATGCCACCGCGA
TCCAGCTCGACGACGTCTTCCACCGCACCATCGCCGAGATCTGTGGCCTGCCGATGATCTGGCGGGCCGTCGACATCTCC
AAGGCGCAGATGGACCGCGGCCGCTATCTCGCCATTCCCAAGCCCGGCTATGGCGAACAGACGATCGAGCAGCACGAGGC
CATTCTCGACGCACTGAAGCGCCACGATGCCGAGGGCGCCGCGCAGGCGATGGAGAACCATCTCGAGACGTCGTTGCGAA
ACACACTCGAAGTCGCCGCCGAGCTTCTCGGCTGA

Upstream 100 bases:

>100_bases
GTTAGCTGCTGGGAGACCCTGGGCCCTTGTCCCTGGTGCATTGAATTTGACATTCTAATATACTTTGACCATCTCAGGCG
AACGAAGATTTGGATTTGCC

Downstream 100 bases:

>100_bases
CGCTCGCCGTCGATCGCAACGGATACGATCAGCACATGCGAAGAATGGGACTGTGTATCGCAACGGCTACGATCTTGCAC
CATAGGCCTGACGCGCGCTC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MDLDPSTLNRALPLRDQIYHKIRNLIVVGQLKPGEVINEVAIAEALGVSRTPVREAVKRISDEGLVKILAQTGTYVAPIS
RADLEEAYVIRRALEMESARRAAAKLTPASAELLEDNMAAHKLAISRGRYATAIQLDDVFHRTIAEICGLPMIWRAVDIS
KAQMDRGRYLAIPKPGYGEQTIEQHEAILDALKRHDAEGAAQAMENHLETSLRNTLEVAAELLG

Sequences:

>Translated_224_residues
MDLDPSTLNRALPLRDQIYHKIRNLIVVGQLKPGEVINEVAIAEALGVSRTPVREAVKRISDEGLVKILAQTGTYVAPIS
RADLEEAYVIRRALEMESARRAAAKLTPASAELLEDNMAAHKLAISRGRYATAIQLDDVFHRTIAEICGLPMIWRAVDIS
KAQMDRGRYLAIPKPGYGEQTIEQHEAILDALKRHDAEGAAQAMENHLETSLRNTLEVAAELLG
>Mature_224_residues
MDLDPSTLNRALPLRDQIYHKIRNLIVVGQLKPGEVINEVAIAEALGVSRTPVREAVKRISDEGLVKILAQTGTYVAPIS
RADLEEAYVIRRALEMESARRAAAKLTPASAELLEDNMAAHKLAISRGRYATAIQLDDVFHRTIAEICGLPMIWRAVDIS
KAQMDRGRYLAIPKPGYGEQTIEQHEAILDALKRHDAEGAAQAMENHLETSLRNTLEVAAELLG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=204, Percent_Identity=34.3137254901961, Blast_Score=130, Evalue=5e-32,
Organism=Escherichia coli, GI87081914, Length=191, Percent_Identity=26.7015706806283, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24692; Mature: 24692

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLDPSTLNRALPLRDQIYHKIRNLIVVGQLKPGEVINEVAIAEALGVSRTPVREAVKRI
CCCCHHHHHHCCCHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
SDEGLVKILAQTGTYVAPISRADLEEAYVIRRALEMESARRAAAKLTPASAELLEDNMAA
CHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
HKLAISRGRYATAIQLDDVFHRTIAEICGLPMIWRAVDISKAQMDRGRYLAIPKPGYGEQ
HHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHH
TIEQHEAILDALKRHDAEGAAQAMENHLETSLRNTLEVAAELLG
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MDLDPSTLNRALPLRDQIYHKIRNLIVVGQLKPGEVINEVAIAEALGVSRTPVREAVKRI
CCCCHHHHHHCCCHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
SDEGLVKILAQTGTYVAPISRADLEEAYVIRRALEMESARRAAAKLTPASAELLEDNMAA
CHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
HKLAISRGRYATAIQLDDVFHRTIAEICGLPMIWRAVDISKAQMDRGRYLAIPKPGYGEQ
HHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHH
TIEQHEAILDALKRHDAEGAAQAMENHLETSLRNTLEVAAELLG
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]