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The map label for this gene is ybaO [C]

Identifier: 13475657

GI number: 13475657

Start: 5580801

End: 5581304

Strand: Direct

Name: ybaO [C]

Synonym: mlr6779

Alternate gene names: 13475657

Gene position: 5580801-5581304 (Clockwise)

Preceding gene: 13475654

Following gene: 13475660

Centisome position: 79.32

GC content: 63.49

Gene sequence:

>504_bases
TTGGCAATCCGCGAAGCATCATCTATCATAATGGCGGCTGAATTTATCAAAATGGTAATCCTCATGGATGCTTTGGACGA
ACGGCTCGTGACCTTGCTGCGGCATGACGCCCGGCGCAGCGTGTCGGATCTCGCCGTCGATCTCGGCGTCTCGCGCGCCA
CGGTTCGGGCACGCATGGAGCGGCTGGAACGGTCGGGCGACATCATCGGCTACACAGTGGTGCTGCGCGCCGACGCCGTC
GATCAGCGCATCCGCGGCATCATGCTCATCGAGATCGAGGGCCATGCCGCCGACCGGGTGGTCCGGGCGCTGGGCGGCTT
CCCGGAAGTCTCGACCATCCATACCACCAACGGTCGCTGGGATCTGGTAGTCGAACTCGGGACGGCCTCGCTGACCGATT
TCGATGCCGTGCTGCGGCGCATCCGATTGATTGCCGGCATAACGGGCAGCGAAACGAGCCTGCTGCTGGCCACGCCGCGC
ACGACGCGAGCACGACTGACGTAA

Upstream 100 bases:

>100_bases
CCGGTGCCCCGACGATTTTGCAACGCATTGTCTTTCCCGCGGCCAAAGTTCGAATGGGGGAGAGGAGATCATGGCGAGCC
GGCAGTATGAACAGACAGAA

Downstream 100 bases:

>100_bases
GCACCGTTCAATGAAGTTCTGGCGGCCGAGGGCGAGCCCCTGAGCGCGCGTCAGGCCTATGGTGCAAGATCGTAGCCGTT
GCGATACACAGTCCCATTCT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MAIREASSIIMAAEFIKMVILMDALDERLVTLLRHDARRSVSDLAVDLGVSRATVRARMERLERSGDIIGYTVVLRADAV
DQRIRGIMLIEIEGHAADRVVRALGGFPEVSTIHTTNGRWDLVVELGTASLTDFDAVLRRIRLIAGITGSETSLLLATPR
TTRARLT

Sequences:

>Translated_167_residues
MAIREASSIIMAAEFIKMVILMDALDERLVTLLRHDARRSVSDLAVDLGVSRATVRARMERLERSGDIIGYTVVLRADAV
DQRIRGIMLIEIEGHAADRVVRALGGFPEVSTIHTTNGRWDLVVELGTASLTDFDAVLRRIRLIAGITGSETSLLLATPR
TTRARLT
>Mature_166_residues
AIREASSIIMAAEFIKMVILMDALDERLVTLLRHDARRSVSDLAVDLGVSRATVRARMERLERSGDIIGYTVVLRADAVD
QRIRGIMLIEIEGHAADRVVRALGGFPEVSTIHTTNGRWDLVVELGTASLTDFDAVLRRIRLIAGITGSETSLLLATPRT
TRARLT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 18393; Mature: 18262

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIREASSIIMAAEFIKMVILMDALDERLVTLLRHDARRSVSDLAVDLGVSRATVRARME
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
RLERSGDIIGYTVVLRADAVDQRIRGIMLIEIEGHAADRVVRALGGFPEVSTIHTTNGRW
HHHHCCCEEEEEEEEECCHHHHHHCEEEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCE
DLVVELGTASLTDFDAVLRRIRLIAGITGSETSLLLATPRTTRARLT
EEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure 
AIREASSIIMAAEFIKMVILMDALDERLVTLLRHDARRSVSDLAVDLGVSRATVRARME
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
RLERSGDIIGYTVVLRADAVDQRIRGIMLIEIEGHAADRVVRALGGFPEVSTIHTTNGRW
HHHHCCCEEEEEEEEECCHHHHHHCEEEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCE
DLVVELGTASLTDFDAVLRRIRLIAGITGSETSLLLATPRTTRARLT
EEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA