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The map label for this gene is fnrN [H]

Identifier: 13475537

GI number: 13475537

Start: 5432953

End: 5433681

Strand: Reverse

Name: fnrN [H]

Synonym: mll6632

Alternate gene names: 13475537

Gene position: 5433681-5432953 (Counterclockwise)

Preceding gene: 13475539

Following gene: 13475535

Centisome position: 77.23

GC content: 60.36

Gene sequence:

>729_bases
ATGACAGTGCGTCAAGATGTTCATAGCGCCGGCATTCCCGTGCTTTGCCAATCATGCGAGGCGCGGCATCGCGGCGTCTG
CGGTGCGCTCGACCCCGATCAATTGGTCGGGCTCGCCAGGATTTCGTCAAAGCACACCATTGAGCCGGGCGTAGAACTGA
TTGGCGACGCCGAGACCGTCGACAGCTATTCCAACGTGCTTTCCGGCGTGGTGAAGCTGACGAAAAGCCTTTCGGACGGG
CGCCAACAGATTGTCGGGCTTCAGTTTGCTCCTGACTTTCTGGGGCGGCCATTCAAGGTGGAAAGCGCTATCAACGCCGA
AGCGGCAACGGCCGTCTCCCTGTGCTCGTTTCCAAGAGCGTCCATCGAGCGAATGATGAGGGAATCGCCGGAGCTCGAGC
ATCGCCTGCTCAAGCAGACATTGAACGAACTTGACGAAGCACGCGACTGGATGGTGACGCTGGGACGCAAGACGGCCGCG
GAAAAAGTGGCGAGCTTCCTGCTGATGATTGCCAGAAACATCGATCCCACGCTCGATCCGGCCACCAACGTGACGAGCTT
CGAGCTACCGCTCACACGCGCCGACATCGCCGATTTCCTCGGACTGACGATCGAGACGGTGAGCCGCCAGCTGACCCGGC
TGCGGACAGACGGGCTGATCCGGATCGAGAACAATCGACATGTAACGGTGACCAGCCTTACCCGCTTGGCCAGTCGCTCC
GGCGCCTGA

Upstream 100 bases:

>100_bases
TTGATTTCGGTCAAAGCCTTTGCACCGGACAAACTGTCACAAGGCTTTTTCAATGGCCGACACTTATCTTGCCCATACTC
AGGGCCCTCGGACGATCGTG

Downstream 100 bases:

>100_bases
CCTCAGCCAGCGATCCCGATCATCGGCAGCACGTGCTCGCGTTCAAACGCGATGTGGCGGCGCAAGTTCTCGAACAGGCC
GCGCAACATGAACCCGATGG

Product: Fnr-type transcriptional regulator

Products: NA

Alternate protein names: ORF-240 [H]

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MTVRQDVHSAGIPVLCQSCEARHRGVCGALDPDQLVGLARISSKHTIEPGVELIGDAETVDSYSNVLSGVVKLTKSLSDG
RQQIVGLQFAPDFLGRPFKVESAINAEAATAVSLCSFPRASIERMMRESPELEHRLLKQTLNELDEARDWMVTLGRKTAA
EKVASFLLMIARNIDPTLDPATNVTSFELPLTRADIADFLGLTIETVSRQLTRLRTDGLIRIENNRHVTVTSLTRLASRS
GA

Sequences:

>Translated_242_residues
MTVRQDVHSAGIPVLCQSCEARHRGVCGALDPDQLVGLARISSKHTIEPGVELIGDAETVDSYSNVLSGVVKLTKSLSDG
RQQIVGLQFAPDFLGRPFKVESAINAEAATAVSLCSFPRASIERMMRESPELEHRLLKQTLNELDEARDWMVTLGRKTAA
EKVASFLLMIARNIDPTLDPATNVTSFELPLTRADIADFLGLTIETVSRQLTRLRTDGLIRIENNRHVTVTSLTRLASRS
GA
>Mature_241_residues
TVRQDVHSAGIPVLCQSCEARHRGVCGALDPDQLVGLARISSKHTIEPGVELIGDAETVDSYSNVLSGVVKLTKSLSDGR
QQIVGLQFAPDFLGRPFKVESAINAEAATAVSLCSFPRASIERMMRESPELEHRLLKQTLNELDEARDWMVTLGRKTAAE
KVASFLLMIARNIDPTLDPATNVTSFELPLTRADIADFLGLTIETVSRQLTRLRTDGLIRIENNRHVTVTSLTRLASRSG
A

Specific function: Promotes the microaerobic and symbiotic induction of fixN, possibly by binding to the FNR consensus binding site upstream of fixN [H]

COG id: COG0664

COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH crp-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787595, Length=239, Percent_Identity=25.5230125523013, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018490
- InterPro:   IPR000595
- InterPro:   IPR001808
- InterPro:   IPR012318
- InterPro:   IPR014710
- InterPro:   IPR018335
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00027 cNMP_binding; PF00325 Crp [H]

EC number: NA

Molecular weight: Translated: 26463; Mature: 26331

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS00042 HTH_CRP_1 ; PS51063 HTH_CRP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVRQDVHSAGIPVLCQSCEARHRGVCGALDPDQLVGLARISSKHTIEPGVELIGDAETV
CCCHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCHHHH
DSYSNVLSGVVKLTKSLSDGRQQIVGLQFAPDFLGRPFKVESAINAEAATAVSLCSFPRA
HHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHCCCCEEEHHHHCHHHHHHHHHHHCCHH
SIERMMRESPELEHRLLKQTLNELDEARDWMVTLGRKTAAEKVASFLLMIARNIDPTLDP
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC
ATNVTSFELPLTRADIADFLGLTIETVSRQLTRLRTDGLIRIENNRHVTVTSLTRLASRS
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEHHHHHHHHHCC
GA
CC
>Mature Secondary Structure 
TVRQDVHSAGIPVLCQSCEARHRGVCGALDPDQLVGLARISSKHTIEPGVELIGDAETV
CCHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCHHHH
DSYSNVLSGVVKLTKSLSDGRQQIVGLQFAPDFLGRPFKVESAINAEAATAVSLCSFPRA
HHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHCCCCEEEHHHHCHHHHHHHHHHHCCHH
SIERMMRESPELEHRLLKQTLNELDEARDWMVTLGRKTAAEKVASFLLMIARNIDPTLDP
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC
ATNVTSFELPLTRADIADFLGLTIETVSRQLTRLRTDGLIRIENNRHVTVTSLTRLASRS
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEHHHHHHHHHCC
GA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2175385 [H]