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The map label for this gene is hofQ [C]

Identifier: 13475417

GI number: 13475417

Start: 5290411

End: 5291856

Strand: Reverse

Name: hofQ [C]

Synonym: mll6479

Alternate gene names: 13475417

Gene position: 5291856-5290411 (Counterclockwise)

Preceding gene: 13475418

Following gene: 13475416

Centisome position: 75.21

GC content: 60.51

Gene sequence:

>1446_bases
ATGCAGGGGTTTTGGGTGAGGATGGCTGCGGTCGCGCTGTCCTGTTTCGCGACGCTACCAACGTGGAGTCTCGTGGCCGA
TGCCGCAGACCGCTTCATCGATGTGTCGAACCCCAGCGTTCATCGCGTTTTCCTGCCGATGTCGCAGTCGGTGACGATCG
CGGTGAACGCCACCCTTGGCGATATCGTCGTCGGTGACGAAAAAATCGCCGACGCGCAGCCGATGACCGACCGCACGCTC
TATGTCATCGGCAAGGGTGCCGGCACCACCACGGTCAATCTGTTCTCACCTGAAAAGCGCTCGCTCGGCGTCATCCAGAT
TGAGGTCGGCGTCGACGTCAGCGACATGGCGCAGGCGATCCGCCAGGTGGCGCCAAGGTCGCGCATCGAAGTCGCCTCGG
TCAATGGCAGGGTCAGGCTTGGCGGTCATGTCAAGGACGGCGTCACGATGGCGGCCATCCTGGAAGTGGCCAAGCAATAC
GGTCCCGACGACATCATCAATTCCGTCACGATCGACGACAGCCAGCAAGTCAATCTCGAAGTCCGCATTCTCGAAGCCAA
GCGCAACGCTGGCCGCGATCTCGGCGTGTCGATCAGGAGCAACAACAGCAGGAGCACGACCATCGTCGGAACCGGGATTG
CCGCCGTCGACAAGGACAACGTGGTGCTCGGCACCGGCGGTTTTCTCAGCGACCTCCTGTCCACCTCGACTCCCTTCGGC
GCGCTGCTCACCCGCGTCATAGACAACAATATCAAGGTCGATCTGTACATCGAGGCGCTCGAGGCCAAGGGCGCGGTGCG
CACGCTTGCCAATCCCAATCTCACCACGCTCTCCGGCGAGCAGGCAAGCTTCAACGCCGGTGGTGAAGTTCCTATCCGAA
CTCTCGACAAGAACGGCGAGATCAGCATTGTCTACAAGCAATTCGGCGTCAATCTTCTGTTCACGCCGGTCGTACTCGAC
GACGGCAAGATCCATATGAACCTGGCGCCGGAAGTCAGCGACCTGAACGGCTTCACCACCGCCGGCGACCCGATTTTCAC
CAACCGCAAACTGTCCACCGTCGTCGAATTGCGCGACGGCCAGAGCTTCGCGGTCGGCGGGCTCCTGTCCAGCAGGACCA
CCAAGTTGCAGAACCAGGTGCCATGGCTCGGCCAGGTGCCGGTGATCGGGACGCTGTTCCGCAATTCGAGCAACCAGAAG
GAAGAGACGGAACTGGTCGTCATCGTCACGCCGCACATCGTGCGGCCGGTGAAGCCTGGCGAGCAGCTGGCGACACCCTT
CGACAAGACACGGCCCGCCAATGACCCGGAATTCTTCGTGCTCGGTCAGCTCGAGGTGAACAAGGACATGATCCGGAGAT
ATGAAACGGGCGACGGCGTCACCGGCCCCTATGGCCACATGTTGAACTTTAAATCGAAGGACAAGATGCTCTATGTCAAG
AAATAG

Upstream 100 bases:

>100_bases
GCGTTTTTCGAGGGGTGAAGCTCGAGACATATGACGTGCCGCGACAGCCATGATATAAAGGCGCAGCTAAAAAAATGAGG
CTGCAATCGGGGAGACGGGG

Downstream 100 bases:

>100_bases
CGCCTTGATCCTCATTCTTTGCTCCGGCCTGCTGGCGGGCTGCGCCGCGGACTATCTGAATCACTACGATTCAGTGACCT
TGGCCGCGGGCGACTCGCAG

Product: pilus assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 481; Mature: 481

Protein sequence:

>481_residues
MQGFWVRMAAVALSCFATLPTWSLVADAADRFIDVSNPSVHRVFLPMSQSVTIAVNATLGDIVVGDEKIADAQPMTDRTL
YVIGKGAGTTTVNLFSPEKRSLGVIQIEVGVDVSDMAQAIRQVAPRSRIEVASVNGRVRLGGHVKDGVTMAAILEVAKQY
GPDDIINSVTIDDSQQVNLEVRILEAKRNAGRDLGVSIRSNNSRSTTIVGTGIAAVDKDNVVLGTGGFLSDLLSTSTPFG
ALLTRVIDNNIKVDLYIEALEAKGAVRTLANPNLTTLSGEQASFNAGGEVPIRTLDKNGEISIVYKQFGVNLLFTPVVLD
DGKIHMNLAPEVSDLNGFTTAGDPIFTNRKLSTVVELRDGQSFAVGGLLSSRTTKLQNQVPWLGQVPVIGTLFRNSSNQK
EETELVVIVTPHIVRPVKPGEQLATPFDKTRPANDPEFFVLGQLEVNKDMIRRYETGDGVTGPYGHMLNFKSKDKMLYVK
K

Sequences:

>Translated_481_residues
MQGFWVRMAAVALSCFATLPTWSLVADAADRFIDVSNPSVHRVFLPMSQSVTIAVNATLGDIVVGDEKIADAQPMTDRTL
YVIGKGAGTTTVNLFSPEKRSLGVIQIEVGVDVSDMAQAIRQVAPRSRIEVASVNGRVRLGGHVKDGVTMAAILEVAKQY
GPDDIINSVTIDDSQQVNLEVRILEAKRNAGRDLGVSIRSNNSRSTTIVGTGIAAVDKDNVVLGTGGFLSDLLSTSTPFG
ALLTRVIDNNIKVDLYIEALEAKGAVRTLANPNLTTLSGEQASFNAGGEVPIRTLDKNGEISIVYKQFGVNLLFTPVVLD
DGKIHMNLAPEVSDLNGFTTAGDPIFTNRKLSTVVELRDGQSFAVGGLLSSRTTKLQNQVPWLGQVPVIGTLFRNSSNQK
EETELVVIVTPHIVRPVKPGEQLATPFDKTRPANDPEFFVLGQLEVNKDMIRRYETGDGVTGPYGHMLNFKSKDKMLYVK
K
>Mature_481_residues
MQGFWVRMAAVALSCFATLPTWSLVADAADRFIDVSNPSVHRVFLPMSQSVTIAVNATLGDIVVGDEKIADAQPMTDRTL
YVIGKGAGTTTVNLFSPEKRSLGVIQIEVGVDVSDMAQAIRQVAPRSRIEVASVNGRVRLGGHVKDGVTMAAILEVAKQY
GPDDIINSVTIDDSQQVNLEVRILEAKRNAGRDLGVSIRSNNSRSTTIVGTGIAAVDKDNVVLGTGGFLSDLLSTSTPFG
ALLTRVIDNNIKVDLYIEALEAKGAVRTLANPNLTTLSGEQASFNAGGEVPIRTLDKNGEISIVYKQFGVNLLFTPVVLD
DGKIHMNLAPEVSDLNGFTTAGDPIFTNRKLSTVVELRDGQSFAVGGLLSSRTTKLQNQVPWLGQVPVIGTLFRNSSNQK
EETELVVIVTPHIVRPVKPGEQLATPFDKTRPANDPEFFVLGQLEVNKDMIRRYETGDGVTGPYGHMLNFKSKDKMLYVK
K

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=247, Percent_Identity=28.3400809716599, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87082242, Length=264, Percent_Identity=28.4090909090909, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 51933; Mature: 51933

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGFWVRMAAVALSCFATLPTWSLVADAADRFIDVSNPSVHRVFLPMSQSVTIAVNATLG
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEECCCCCEEEEEEECCCCEEEEEEEEEC
DIVVGDEKIADAQPMTDRTLYVIGKGAGTTTVNLFSPEKRSLGVIQIEVGVDVSDMAQAI
EEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHH
RQVAPRSRIEVASVNGRVRLGGHVKDGVTMAAILEVAKQYGPDDIINSVTIDDSQQVNLE
HHHCCCCCEEEEECCCEEEECCCCCCCHHHHHHHHHHHHCCCCHHHCCEEECCCCEEEEE
VRILEAKRNAGRDLGVSIRSNNSRSTTIVGTGIAAVDKDNVVLGTGGFLSDLLSTSTPFG
EEEEEECCCCCCCEEEEEECCCCCEEEEEECCEEEECCCCEEEECCHHHHHHHHCCCCHH
ALLTRVIDNNIKVDLYIEALEAKGAVRTLANPNLTTLSGEQASFNAGGEVPIRTLDKNGE
HHHHHHHCCCCEEEEEEEEECCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEECCCCC
ISIVYKQFGVNLLFTPVVLDDGKIHMNLAPEVSDLNGFTTAGDPIFTNRKLSTVVELRDG
EEEEEHHCCCEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCEECCCCEEEEEEECCC
QSFAVGGLLSSRTTKLQNQVPWLGQVPVIGTLFRNSSNQKEETELVVIVTPHIVRPVKPG
CEEEECCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCHHCCCCCCC
EQLATPFDKTRPANDPEFFVLGQLEVNKDMIRRYETGDGVTGPYGHMLNFKSKDKMLYVK
HHHCCCCHHCCCCCCCCEEEEEEEECCHHHHHHCCCCCCCCCCCCCEECCCCCCCEEEEE
K
C
>Mature Secondary Structure
MQGFWVRMAAVALSCFATLPTWSLVADAADRFIDVSNPSVHRVFLPMSQSVTIAVNATLG
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEECCCCCEEEEEEECCCCEEEEEEEEEC
DIVVGDEKIADAQPMTDRTLYVIGKGAGTTTVNLFSPEKRSLGVIQIEVGVDVSDMAQAI
EEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHH
RQVAPRSRIEVASVNGRVRLGGHVKDGVTMAAILEVAKQYGPDDIINSVTIDDSQQVNLE
HHHCCCCCEEEEECCCEEEECCCCCCCHHHHHHHHHHHHCCCCHHHCCEEECCCCEEEEE
VRILEAKRNAGRDLGVSIRSNNSRSTTIVGTGIAAVDKDNVVLGTGGFLSDLLSTSTPFG
EEEEEECCCCCCCEEEEEECCCCCEEEEEECCEEEECCCCEEEECCHHHHHHHHCCCCHH
ALLTRVIDNNIKVDLYIEALEAKGAVRTLANPNLTTLSGEQASFNAGGEVPIRTLDKNGE
HHHHHHHCCCCEEEEEEEEECCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEEECCCCC
ISIVYKQFGVNLLFTPVVLDDGKIHMNLAPEVSDLNGFTTAGDPIFTNRKLSTVVELRDG
EEEEEHHCCCEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCEECCCCEEEEEEECCC
QSFAVGGLLSSRTTKLQNQVPWLGQVPVIGTLFRNSSNQKEETELVVIVTPHIVRPVKPG
CEEEECCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCHHCCCCCCC
EQLATPFDKTRPANDPEFFVLGQLEVNKDMIRRYETGDGVTGPYGHMLNFKSKDKMLYVK
HHHCCCCHHCCCCCCCCEEEEEEEECCHHHHHHCCCCCCCCCCCCCEECCCCCCCEEEEE
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]