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The map label for this gene is intB [H]

Identifier: 13475381

GI number: 13475381

Start: 5254244

End: 5255569

Strand: Reverse

Name: intB [H]

Synonym: mll6432

Alternate gene names: 13475381

Gene position: 5255569-5254244 (Counterclockwise)

Preceding gene: 13475382

Following gene: 13475380

Centisome position: 74.69

GC content: 59.95

Gene sequence:

>1326_bases
ATGGAGGCCCCGAAAATGGCTCTTTCCGACGTAAAATGCCGTAATGCCCGACCCGCTTCCAAGCTCGTGAAATTGTCTGA
CGGTGGCGGGCTCCAGCTTTGGGTGCAGCCTACCGGATCTCGCCTATGGCGCCTCGCCTATCGTTTTGGCGGCAAGCAGA
AGCTTCTGGCGTTGGGCAGCTATCCCCTCATCTCCCTCGCTGAGGCACGCGAGGCGCGCGATACCGCCAAACGTCTCCTC
CTACGTGGCATCGACCCCGCACAGGAGCGTAAGTCGCAAAAGGCTTCGGCGGAGGACACCTTTCGCTCAATCGCGGAGGA
CTATGTCGACAAGCTGAAGAAGGAGGGACGTGCCGACCGGACCATCACCAAGGTCAAATGGCTGCTCGACTTTGCCTATC
CAACGTTTGGGGACAAAAGCGTTCGGGAGATCGATCCGGCTACAATTCTTGCCGCTCTCCGCAGCGTGGAGGTTCGTGGT
CGATACGAGTCGGCCAGGCGAATGCGCTCCACCATCGGCAGCGTGTTTCGATATGCAATCGCAACCGCACGCGCCGATGT
AGATCCGACGATCGCCCTGAGGGGCGCACTCGTCGGTCCGACGGTCACGCCCCGTGCCGCGGTTACCGATCCTAAGGCCT
TGGGAGGCTTGCTGAGGGCGATTAATGCATTTGACGGACAGCCTACAACCCGAGCCGCTCTGAAGCTGATGGCCCTGCTA
TTTCCCCGCCCCGGCGAGCTGCGCGCGGCCGGATGGGACGAGTTCGATTTCGAAAGCTCGGTGTGGAGCATCCCTGAAGG
ACGCATGAAGATGCGACGGCCGCACCGCGTACCTCTTTCCACGCAGGCCGTCAGCGTCCTGACCTCACTTAGAGAAATCT
CTGGTGGTGGATCGCTGTTGTTTCCTAGTGTTCGATCGGGTTCGCGTCCGATTTCCGACAACACGCTTAACGCCGCCCTT
CGCCGTATGGGCTATGGCAAAGAAGAAGCTACCGCGCACGGCTTTCGAGCAACGGCATCAACTCTGCTAAACGAATGCGG
CAAGTGGCACCCGGACGCCGTAGAGCGGCAGCTGGCCCACATTGAGAACAACGACGTTCGGCGCGCCTATGCCCGGGCAG
AGCACTGGGAAGAGCGCGTCAGGATGATGCAATGGTGGGCCGATTATCTGGATGAACTCGAGAGCAAAAACTCGCGGGTG
GTCTCAATCGGGGGACGCGAGGCAAGCCTGCTGTCCATACATCCTCGCGAGGGTCTAGTTTGGAAGCCAACAGCGACGGT
TCGCCAAACGACGAGTCGAACCTCCAACCTCCGAAAATCACACTGA

Upstream 100 bases:

>100_bases
ATGGTCGGGGTTCGTGGAATTTCGGCGCAGTTGGTCCAACGAGGCGGGGGGCTGGTATTTTCGCTGGTATTGGAGATCCT
GATGGTATCGATGCAGCCAA

Downstream 100 bases:

>100_bases
ACCCCGTCGAAAACACCGAAACTGGGCGACCAATGTTGCAGGCCCGGAGGGTCATCGTTTTCCACAGGAAATCAATACGT
TATGTTGGCCACACATTTCC

Product: symbiosis island integrase

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MEAPKMALSDVKCRNARPASKLVKLSDGGGLQLWVQPTGSRLWRLAYRFGGKQKLLALGSYPLISLAEAREARDTAKRLL
LRGIDPAQERKSQKASAEDTFRSIAEDYVDKLKKEGRADRTITKVKWLLDFAYPTFGDKSVREIDPATILAALRSVEVRG
RYESARRMRSTIGSVFRYAIATARADVDPTIALRGALVGPTVTPRAAVTDPKALGGLLRAINAFDGQPTTRAALKLMALL
FPRPGELRAAGWDEFDFESSVWSIPEGRMKMRRPHRVPLSTQAVSVLTSLREISGGGSLLFPSVRSGSRPISDNTLNAAL
RRMGYGKEEATAHGFRATASTLLNECGKWHPDAVERQLAHIENNDVRRAYARAEHWEERVRMMQWWADYLDELESKNSRV
VSIGGREASLLSIHPREGLVWKPTATVRQTTSRTSNLRKSH

Sequences:

>Translated_441_residues
MEAPKMALSDVKCRNARPASKLVKLSDGGGLQLWVQPTGSRLWRLAYRFGGKQKLLALGSYPLISLAEAREARDTAKRLL
LRGIDPAQERKSQKASAEDTFRSIAEDYVDKLKKEGRADRTITKVKWLLDFAYPTFGDKSVREIDPATILAALRSVEVRG
RYESARRMRSTIGSVFRYAIATARADVDPTIALRGALVGPTVTPRAAVTDPKALGGLLRAINAFDGQPTTRAALKLMALL
FPRPGELRAAGWDEFDFESSVWSIPEGRMKMRRPHRVPLSTQAVSVLTSLREISGGGSLLFPSVRSGSRPISDNTLNAAL
RRMGYGKEEATAHGFRATASTLLNECGKWHPDAVERQLAHIENNDVRRAYARAEHWEERVRMMQWWADYLDELESKNSRV
VSIGGREASLLSIHPREGLVWKPTATVRQTTSRTSNLRKSH
>Mature_441_residues
MEAPKMALSDVKCRNARPASKLVKLSDGGGLQLWVQPTGSRLWRLAYRFGGKQKLLALGSYPLISLAEAREARDTAKRLL
LRGIDPAQERKSQKASAEDTFRSIAEDYVDKLKKEGRADRTITKVKWLLDFAYPTFGDKSVREIDPATILAALRSVEVRG
RYESARRMRSTIGSVFRYAIATARADVDPTIALRGALVGPTVTPRAAVTDPKALGGLLRAINAFDGQPTTRAALKLMALL
FPRPGELRAAGWDEFDFESSVWSIPEGRMKMRRPHRVPLSTQAVSVLTSLREISGGGSLLFPSVRSGSRPISDNTLNAAL
RRMGYGKEEATAHGFRATASTLLNECGKWHPDAVERQLAHIENNDVRRAYARAEHWEERVRMMQWWADYLDELESKNSRV
VSIGGREASLLSIHPREGLVWKPTATVRQTTSRTSNLRKSH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=394, Percent_Identity=36.2944162436548, Blast_Score=238, Evalue=5e-64,
Organism=Escherichia coli, GI1788690, Length=378, Percent_Identity=34.6560846560847, Blast_Score=221, Evalue=6e-59,
Organism=Escherichia coli, GI145693166, Length=392, Percent_Identity=34.6938775510204, Blast_Score=192, Evalue=4e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 49100; Mature: 49100

Theoretical pI: Translated: 10.86; Mature: 10.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAPKMALSDVKCRNARPASKLVKLSDGGGLQLWVQPTGSRLWRLAYRFGGKQKLLALGS
CCCCHHHHHHCCCCCCCCHHHEEEECCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEECC
YPLISLAEAREARDTAKRLLLRGIDPAQERKSQKASAEDTFRSIAEDYVDKLKKEGRADR
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCH
TITKVKWLLDFAYPTFGDKSVREIDPATILAALRSVEVRGRYESARRMRSTIGSVFRYAI
HHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATARADVDPTIALRGALVGPTVTPRAAVTDPKALGGLLRAINAFDGQPTTRAALKLMALL
HHHHCCCCCCCEECCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
FPRPGELRAAGWDEFDFESSVWSIPEGRMKMRRPHRVPLSTQAVSVLTSLREISGGGSLL
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEE
FPSVRSGSRPISDNTLNAALRRMGYGKEEATAHGFRATASTLLNECGKWHPDAVERQLAH
ECCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
IENNDVRRAYARAEHWEERVRMMQWWADYLDELESKNSRVVSIGGREASLLSIHPREGLV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCEE
WKPTATVRQTTSRTSNLRKSH
ECCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEAPKMALSDVKCRNARPASKLVKLSDGGGLQLWVQPTGSRLWRLAYRFGGKQKLLALGS
CCCCHHHHHHCCCCCCCCHHHEEEECCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEECC
YPLISLAEAREARDTAKRLLLRGIDPAQERKSQKASAEDTFRSIAEDYVDKLKKEGRADR
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCH
TITKVKWLLDFAYPTFGDKSVREIDPATILAALRSVEVRGRYESARRMRSTIGSVFRYAI
HHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATARADVDPTIALRGALVGPTVTPRAAVTDPKALGGLLRAINAFDGQPTTRAALKLMALL
HHHHCCCCCCCEECCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
FPRPGELRAAGWDEFDFESSVWSIPEGRMKMRRPHRVPLSTQAVSVLTSLREISGGGSLL
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEE
FPSVRSGSRPISDNTLNAALRRMGYGKEEATAHGFRATASTLLNECGKWHPDAVERQLAH
ECCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
IENNDVRRAYARAEHWEERVRMMQWWADYLDELESKNSRVVSIGGREASLLSIHPREGLV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCEE
WKPTATVRQTTSRTSNLRKSH
ECCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]