| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is trbE [H]
Identifier: 13475354
GI number: 13475354
Start: 5222139
End: 5224589
Strand: Direct
Name: trbE [H]
Synonym: mlr6400
Alternate gene names: 13475354
Gene position: 5222139-5224589 (Clockwise)
Preceding gene: 13475353
Following gene: 13475355
Centisome position: 74.22
GC content: 62.71
Gene sequence:
>2451_bases ATGCTGAACCTTTCGGAATATCGCGGCAAGGCCGACCGGCTTGCCGACCATCTGCCCTGGGCAGCACTGGTGGCGCCCGG CATCGTGCTCAACAAGGACGGCAGCGTTCAGCGGACTCTTCGATTTCGCGGGCCCGATCTGGAAAGCTCGACCGAAGCCG AACTCCTCGGCATCTGCGCCCGGGCCAACAATGCGCTTAGACGCCTTGGCTCCGGCTGGACATTGTTTTTCGAGGCCGAG CGCATCGAAGCGCTGGGCTATCCGTCCTCGCGTTTCCCGGACGCGGCGTCATGGCTGGTTGATGAAGAACGGCGTGCTGC CTTCGAAGGCAAGGTCGCGCATTTCGAGAGCCGCTGTCACCTGACCTTGCTGTCCATGCCGCCACCGGACGCCCAGGCGC GGGCGGAAAGCGCGCTCGTCGACTCGCATCATTCAGAAGGCGAAAGAGACTGGCGCCAGGAGATGGCGCGGTTCCGTGAC GAGACCGACCGTGTGCTGGATCTTCTGTCGGGCTTCATGCCCGAAGTGCGTCCGCTCGATGACGCCGAGACGCTGACATA CCTGCACGACACGATCTCGACCCGCCGCCATCCGGTCGCCGTGCCGGAAACGCCAATGTATCTGGACGGCATCCTGGTCG ATGTGCCGCTTACCGGCGGCTTGGAGCCGATGCTCGGTGAGCAACATCTTCGCACCCTTACCATCCTCGGCTTTCCGAAC CTCACCCGGCCCGGAATCCTCGATGCCCTCAATCATCAGGATTTCGCCTATCGCTGGATGACGCGCTTCATTCCGCTCGA CAAGACCGAGGCCACCAAGACGCTGACCCGCTTGCGCCGGCAGTGGTTTGCCAAGCGCAAATCGATCGTCGCAATCCTGC GCGAGGTTGTAAGCAACGAACCCGTTCCGCTCGTCGACAGCGACGCCGACAATAAGGCGCTCGACGCCGATGAAGCACTT CAGGCGTTGGGCGGCGATCATGTCGGCTTCGGGTATCTCACTGCAACGGTGACGGTATGGGACGAGGATCGCCAAGCCGC CGCTGAGAAACTTCGCGCGGTCGAGCGCATCATCAATGGGCTCGGGTTCACCACCATCCGCGAAAGCGTCAATGCGGTCG AAGCCTGGCTCGGCTCGCTGCCGGGTCATGTCTATGCCAACGTTCGTCAGCCGCTCGTTCACACGCTGAACCTTGCCCAT CTCATGCCGCTTTCCTCGGTGTGGGCCGGTCCTGCGGCGAACGAGCATCTGGCTGAAGTCACTGGACGAGAGGCCCCGCC GCTCCTCATCGCCGAAACCAGCGGGTCGACTCCGTTCCGGCTTTCTTCCCATGTCGAAGATGTCGGCCACATGCTGATCG TTGGACCGACCGGCGCCGGAAAATCGGTGCTGCTTGCCCTGATCGCCCTGCAGTTTCGTCGCTATGCCGGCGCGCAGGTC TATGTCTTCGACAAAGGCAATTCGGCGCGCGCGGCAACGCTCGCCATGGGTGGAGAGCATCATGTCTTGGGTTCGGACGG TGCGCTTGCCTTCCAGCCACTGCGCAATATCGGTGATCAGGGTAGGCGCAGCTGGGCAGCTGAATGGATCGCCGGCCTGA TTGCCCATGAGAACGTCACCCTCACGCCGGAGGTGAAGGAGGCGATCTGGTCGGCGCTCAACAGCCTCGCCACCGCGCCG GCGCAGGAGCGCACGCTGACCGGTCTGTCGGTCCTGCTTCAGTCCAATGCACTGAAGTCCGCCTTAATGCCCTACACGCT CGACGGTCCCTTCGGCCGATTGCTCGATGCCGACGACGATCGGCTGGCCTTGTCGGATGTGCAGTGCTTCGAGACCGAGG AGCTGATGCATAGCCAAAGCGCTGTGCTGCCTGTGCTCACCTATCTCTTCCATCGCCTTGAGGAGCGGTTCGACGGGCGA CCGACGCTGCTCATGCTCGATGAGGCCTGGGTCTATCTCGACAATCCGCTTTTTGCTGCCCGCATCCGCGAATGGCTGAA GGTGCTGCGAAAGAAGAACGTATCGGTGATCTTCGCCACGCAGTCGCTTGCCGACATCGCCGGCTCTGCAATAGCGCCGG CGATCATCGAGAGCTGCCCACAGCGCATTTTTCTCCCCAATGATCGTGCCGTGGAACCGCAGGCACGGACTGCCTACGAG CGCTTCGGTCTCAACGACCGGCAGATTGAACTGATCGCCCGGGCCACGCCGAAGCGGCACTACTATTTGCAGTCGCGCTG CGGCAACCGTCTCTTCGAGCTCGGGCTCGGCCCCATCGCGCTTGCACTTTGCGGCGCCTCGGGTCCAGCCGCGCAAAGCC TGATCGACAGGGTCCTGTCCAAGCACGGGCAGGACAGCTTTGTCTTTCGCTTCCTCGGCGCCCGCGGCCTGGATTGGGCG GCCGAGCTTCTCCAGCAATTCCCTCAACCAACCAAGGAGCAATCGCCATGA
Upstream 100 bases:
>100_bases TCTGGCTTGGCGGCCACACGCTCGCGGTCTTTGCCGCAAGGCGCGATCCCGACTTTGCCAGCGTGCTTGTCCGTCACCTT CGCCTGAGGGGATGGCTCGC
Downstream 100 bases:
>100_bases TGCGGCGCCGCTTTCTCTCGGGCCTGATCACCCTTTCGTTGATCGCCAAGCCGATGGCCGACTACGTGCAGCCGGCCTAC GCGCTCATCGTGTTCGATCC
Product: conjugal transfer ATPase TrbE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 816; Mature: 816
Protein sequence:
>816_residues MLNLSEYRGKADRLADHLPWAALVAPGIVLNKDGSVQRTLRFRGPDLESSTEAELLGICARANNALRRLGSGWTLFFEAE RIEALGYPSSRFPDAASWLVDEERRAAFEGKVAHFESRCHLTLLSMPPPDAQARAESALVDSHHSEGERDWRQEMARFRD ETDRVLDLLSGFMPEVRPLDDAETLTYLHDTISTRRHPVAVPETPMYLDGILVDVPLTGGLEPMLGEQHLRTLTILGFPN LTRPGILDALNHQDFAYRWMTRFIPLDKTEATKTLTRLRRQWFAKRKSIVAILREVVSNEPVPLVDSDADNKALDADEAL QALGGDHVGFGYLTATVTVWDEDRQAAAEKLRAVERIINGLGFTTIRESVNAVEAWLGSLPGHVYANVRQPLVHTLNLAH LMPLSSVWAGPAANEHLAEVTGREAPPLLIAETSGSTPFRLSSHVEDVGHMLIVGPTGAGKSVLLALIALQFRRYAGAQV YVFDKGNSARAATLAMGGEHHVLGSDGALAFQPLRNIGDQGRRSWAAEWIAGLIAHENVTLTPEVKEAIWSALNSLATAP AQERTLTGLSVLLQSNALKSALMPYTLDGPFGRLLDADDDRLALSDVQCFETEELMHSQSAVLPVLTYLFHRLEERFDGR PTLLMLDEAWVYLDNPLFAARIREWLKVLRKKNVSVIFATQSLADIAGSAIAPAIIESCPQRIFLPNDRAVEPQARTAYE RFGLNDRQIELIARATPKRHYYLQSRCGNRLFELGLGPIALALCGASGPAAQSLIDRVLSKHGQDSFVFRFLGARGLDWA AELLQQFPQPTKEQSP
Sequences:
>Translated_816_residues MLNLSEYRGKADRLADHLPWAALVAPGIVLNKDGSVQRTLRFRGPDLESSTEAELLGICARANNALRRLGSGWTLFFEAE RIEALGYPSSRFPDAASWLVDEERRAAFEGKVAHFESRCHLTLLSMPPPDAQARAESALVDSHHSEGERDWRQEMARFRD ETDRVLDLLSGFMPEVRPLDDAETLTYLHDTISTRRHPVAVPETPMYLDGILVDVPLTGGLEPMLGEQHLRTLTILGFPN LTRPGILDALNHQDFAYRWMTRFIPLDKTEATKTLTRLRRQWFAKRKSIVAILREVVSNEPVPLVDSDADNKALDADEAL QALGGDHVGFGYLTATVTVWDEDRQAAAEKLRAVERIINGLGFTTIRESVNAVEAWLGSLPGHVYANVRQPLVHTLNLAH LMPLSSVWAGPAANEHLAEVTGREAPPLLIAETSGSTPFRLSSHVEDVGHMLIVGPTGAGKSVLLALIALQFRRYAGAQV YVFDKGNSARAATLAMGGEHHVLGSDGALAFQPLRNIGDQGRRSWAAEWIAGLIAHENVTLTPEVKEAIWSALNSLATAP AQERTLTGLSVLLQSNALKSALMPYTLDGPFGRLLDADDDRLALSDVQCFETEELMHSQSAVLPVLTYLFHRLEERFDGR PTLLMLDEAWVYLDNPLFAARIREWLKVLRKKNVSVIFATQSLADIAGSAIAPAIIESCPQRIFLPNDRAVEPQARTAYE RFGLNDRQIELIARATPKRHYYLQSRCGNRLFELGLGPIALALCGASGPAAQSLIDRVLSKHGQDSFVFRFLGARGLDWA AELLQQFPQPTKEQSP >Mature_816_residues MLNLSEYRGKADRLADHLPWAALVAPGIVLNKDGSVQRTLRFRGPDLESSTEAELLGICARANNALRRLGSGWTLFFEAE RIEALGYPSSRFPDAASWLVDEERRAAFEGKVAHFESRCHLTLLSMPPPDAQARAESALVDSHHSEGERDWRQEMARFRD ETDRVLDLLSGFMPEVRPLDDAETLTYLHDTISTRRHPVAVPETPMYLDGILVDVPLTGGLEPMLGEQHLRTLTILGFPN LTRPGILDALNHQDFAYRWMTRFIPLDKTEATKTLTRLRRQWFAKRKSIVAILREVVSNEPVPLVDSDADNKALDADEAL QALGGDHVGFGYLTATVTVWDEDRQAAAEKLRAVERIINGLGFTTIRESVNAVEAWLGSLPGHVYANVRQPLVHTLNLAH LMPLSSVWAGPAANEHLAEVTGREAPPLLIAETSGSTPFRLSSHVEDVGHMLIVGPTGAGKSVLLALIALQFRRYAGAQV YVFDKGNSARAATLAMGGEHHVLGSDGALAFQPLRNIGDQGRRSWAAEWIAGLIAHENVTLTPEVKEAIWSALNSLATAP AQERTLTGLSVLLQSNALKSALMPYTLDGPFGRLLDADDDRLALSDVQCFETEELMHSQSAVLPVLTYLFHRLEERFDGR PTLLMLDEAWVYLDNPLFAARIREWLKVLRKKNVSVIFATQSLADIAGSAIAPAIIESCPQRIFLPNDRAVEPQARTAYE RFGLNDRQIELIARATPKRHYYLQSRCGNRLFELGLGPIALALCGASGPAAQSLIDRVLSKHGQDSFVFRFLGARGLDWA AELLQQFPQPTKEQSP
Specific function: Unknown
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbE/virB4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR004346 - InterPro: IPR018145 [H]
Pfam domain/function: PF03135 CagE_TrbE_VirB [H]
EC number: NA
Molecular weight: Translated: 90210; Mature: 90210
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNLSEYRGKADRLADHLPWAALVAPGIVLNKDGSVQRTLRFRGPDLESSTEAELLGICA CCCCHHHCCHHHHHHHHCCHHHHHCCCEEECCCCCCEEHEEECCCCCCCCCHHHHHHHHH RANNALRRLGSGWTLFFEAERIEALGYPSSRFPDAASWLVDEERRAAFEGKVAHFESRCH HHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCE LTLLSMPPPDAQARAESALVDSHHSEGERDWRQEMARFRDETDRVLDLLSGFMPEVRPLD EEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC DAETLTYLHDTISTRRHPVAVPETPMYLDGILVDVPLTGGLEPMLGEQHLRTLTILGFPN CHHHHHHHHHHHHCCCCCCCCCCCCCEECCEEEEECCCCCCCCHHCHHHHCEEEEECCCC LTRPGILDALNHQDFAYRWMTRFIPLDKTEATKTLTRLRRQWFAKRKSIVAILREVVSNE CCCCCHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PVPLVDSDADNKALDADEALQALGGDHVGFGYLTATVTVWDEDRQAAAEKLRAVERIING CCCEECCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHH LGFTTIRESVNAVEAWLGSLPGHVYANVRQPLVHTLNLAHLMPLSSVWAGPAANEHLAEV CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHH TGREAPPLLIAETSGSTPFRLSSHVEDVGHMLIVGPTGAGKSVLLALIALQFRRYAGAQV CCCCCCCEEEEECCCCCCEEHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEE YVFDKGNSARAATLAMGGEHHVLGSDGALAFQPLRNIGDQGRRSWAAEWIAGLIAHENVT EEEECCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE LTPEVKEAIWSALNSLATAPAQERTLTGLSVLLQSNALKSALMPYTLDGPFGRLLDADDD ECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHCCCCCCC RLALSDVQCFETEELMHSQSAVLPVLTYLFHRLEERFDGRPTLLMLDEAWVYLDNPLFAA CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEECCCHHHH RIREWLKVLRKKNVSVIFATQSLADIAGSAIAPAIIESCPQRIFLPNDRAVEPQARTAYE HHHHHHHHHHHCCCEEEEEEHHHHHHHCHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHH RFGLNDRQIELIARATPKRHYYLQSRCGNRLFELGLGPIALALCGASGPAAQSLIDRVLS HHCCCCCCEEEEEECCCCHHHHHHHHHCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHH KHGQDSFVFRFLGARGLDWAAELLQQFPQPTKEQSP HCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MLNLSEYRGKADRLADHLPWAALVAPGIVLNKDGSVQRTLRFRGPDLESSTEAELLGICA CCCCHHHCCHHHHHHHHCCHHHHHCCCEEECCCCCCEEHEEECCCCCCCCCHHHHHHHHH RANNALRRLGSGWTLFFEAERIEALGYPSSRFPDAASWLVDEERRAAFEGKVAHFESRCH HHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCE LTLLSMPPPDAQARAESALVDSHHSEGERDWRQEMARFRDETDRVLDLLSGFMPEVRPLD EEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC DAETLTYLHDTISTRRHPVAVPETPMYLDGILVDVPLTGGLEPMLGEQHLRTLTILGFPN CHHHHHHHHHHHHCCCCCCCCCCCCCEECCEEEEECCCCCCCCHHCHHHHCEEEEECCCC LTRPGILDALNHQDFAYRWMTRFIPLDKTEATKTLTRLRRQWFAKRKSIVAILREVVSNE CCCCCHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PVPLVDSDADNKALDADEALQALGGDHVGFGYLTATVTVWDEDRQAAAEKLRAVERIING CCCEECCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHH LGFTTIRESVNAVEAWLGSLPGHVYANVRQPLVHTLNLAHLMPLSSVWAGPAANEHLAEV CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHH TGREAPPLLIAETSGSTPFRLSSHVEDVGHMLIVGPTGAGKSVLLALIALQFRRYAGAQV CCCCCCCEEEEECCCCCCEEHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEE YVFDKGNSARAATLAMGGEHHVLGSDGALAFQPLRNIGDQGRRSWAAEWIAGLIAHENVT EEEECCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE LTPEVKEAIWSALNSLATAPAQERTLTGLSVLLQSNALKSALMPYTLDGPFGRLLDADDD ECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHCCCCCCC RLALSDVQCFETEELMHSQSAVLPVLTYLFHRLEERFDGRPTLLMLDEAWVYLDNPLFAA CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEECCCHHHH RIREWLKVLRKKNVSVIFATQSLADIAGSAIAPAIIESCPQRIFLPNDRAVEPQARTAYE HHHHHHHHHHHCCCEEEEEEHHHHHHHCHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHH RFGLNDRQIELIARATPKRHYYLQSRCGNRLFELGLGPIALALCGASGPAAQSLIDRVLS HHCCCCCCEEEEEECCCCHHHHHHHHHCCHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHH KHGQDSFVFRFLGARGLDWAAELLQQFPQPTKEQSP HCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8763954 [H]