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The map label for this gene is 13475304

Identifier: 13475304

GI number: 13475304

Start: 5159362

End: 5160426

Strand: Direct

Name: 13475304

Synonym: mlr6344

Alternate gene names: NA

Gene position: 5159362-5160426 (Clockwise)

Preceding gene: 13475303

Following gene: 13475305

Centisome position: 73.33

GC content: 58.31

Gene sequence:

>1065_bases
GTGCAGTTTTTGGCAGCCGCTTTGGTGAGCCCCCCTCTATTGGAACCAGCGCTGACACTGTCCCACGAGGTCGCCTCGTG
GCTCAATGACACTGCGGCTTCGCGCGGACCGTTTCAGACCCGGATCAACGACGTGCCACTGTCGGTGCGTGTGGCAGGGC
TTGTCTGGCAGGAGAATTTTGCCGCCATTCCAATGCTCGACTGCATTTGTAGGGTCGGAGCTGAGACGGTCGTGCTGTCG
ATATCGCGGTCGCTCGTAGAGGGGCTCATCGCAACAGTGCAGAATGGGCTGACTTTCCCTTCCGAGCCAACGGCTTCACT
CATTGTTGAACTTGCACTTGAGCCACTTATTGCTCGACTGGAGTATAGGACTCAGCTGAACGTGCAGCTCGTGCGCGTGT
TTGAAGCCGCGACACTGGCTCCTTATCTCGAACTGGATATCGACTTCGGCCCGGTCAGTGGCAAGGGTCGTCTGTTCCTG
TTCTCGCCTCTCGATGGCTTGGTGCCGTCTGCGTTTCGTGCTCTGGGCGAACTGTTTGGCCAGTTACCGCGACAGCCGCG
CGGATTACTTTCAGACCTCCCGATCGTGGTTGCAGGAGAGATCGGCACGCTGCACGTTCCTGCGGCGATTCTTCGAAAAG
CATGTGCCGGTGATGCTCTGTTGCCGGACCTGGCGCCGTTCGGCCGGGGCGAGATCGCCCTATCTTTGGGCCAGTTGTGG
GCCAGCGCCGATCTTGAGGGCGACCAGCTAGTCCTGCACGGGCCTTTCCGCCCGCGTTCCTATTCTTTGGAGAATGCGCA
TATGACACAACTTGGATCGCAACTAGGGCCGACGGAGGATCTCGACGATGTCGAGATCATGCTTGTCTTTGAATGCGGTC
GCTGGCCTATTCCTCTAGGGGAATTAAGAAGTGCCGGCGAAGGGCATATTTTCGAACTTGGACGGCCGATTCAGGATCCG
GTCGATATACTTGCCAACGGTCAGTGTATCGGGCGTGGCGACATCGTGCGCATTGGAGATACGCTGGGCATCAGGCTCCG
TGGCCGGTTGGGATGCAATGACTGA

Upstream 100 bases:

>100_bases
CGAGGCCGACGATGAGATACTGCTTCGATTTGGCAGGGGACCGCTTTCCCAGGTCGCGAAACGGATTCGATAACCTGCAG
GTCCTCCGAATGACAGAACG

Downstream 100 bases:

>100_bases
GCTCCAGCCGCCAATCCTGGCGCTTCTCGCAGTTACCGCCGGACTGGGTCTGCTGGTTTTGGTGGTCGTCACGACCACGG
CCTTTGTAAAGGTATCGGTT

Product: translocation protein in type III secretion system, hrcQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MQFLAAALVSPPLLEPALTLSHEVASWLNDTAASRGPFQTRINDVPLSVRVAGLVWQENFAAIPMLDCICRVGAETVVLS
ISRSLVEGLIATVQNGLTFPSEPTASLIVELALEPLIARLEYRTQLNVQLVRVFEAATLAPYLELDIDFGPVSGKGRLFL
FSPLDGLVPSAFRALGELFGQLPRQPRGLLSDLPIVVAGEIGTLHVPAAILRKACAGDALLPDLAPFGRGEIALSLGQLW
ASADLEGDQLVLHGPFRPRSYSLENAHMTQLGSQLGPTEDLDDVEIMLVFECGRWPIPLGELRSAGEGHIFELGRPIQDP
VDILANGQCIGRGDIVRIGDTLGIRLRGRLGCND

Sequences:

>Translated_354_residues
MQFLAAALVSPPLLEPALTLSHEVASWLNDTAASRGPFQTRINDVPLSVRVAGLVWQENFAAIPMLDCICRVGAETVVLS
ISRSLVEGLIATVQNGLTFPSEPTASLIVELALEPLIARLEYRTQLNVQLVRVFEAATLAPYLELDIDFGPVSGKGRLFL
FSPLDGLVPSAFRALGELFGQLPRQPRGLLSDLPIVVAGEIGTLHVPAAILRKACAGDALLPDLAPFGRGEIALSLGQLW
ASADLEGDQLVLHGPFRPRSYSLENAHMTQLGSQLGPTEDLDDVEIMLVFECGRWPIPLGELRSAGEGHIFELGRPIQDP
VDILANGQCIGRGDIVRIGDTLGIRLRGRLGCND
>Mature_354_residues
MQFLAAALVSPPLLEPALTLSHEVASWLNDTAASRGPFQTRINDVPLSVRVAGLVWQENFAAIPMLDCICRVGAETVVLS
ISRSLVEGLIATVQNGLTFPSEPTASLIVELALEPLIARLEYRTQLNVQLVRVFEAATLAPYLELDIDFGPVSGKGRLFL
FSPLDGLVPSAFRALGELFGQLPRQPRGLLSDLPIVVAGEIGTLHVPAAILRKACAGDALLPDLAPFGRGEIALSLGQLW
ASADLEGDQLVLHGPFRPRSYSLENAHMTQLGSQLGPTEDLDDVEIMLVFECGRWPIPLGELRSAGEGHIFELGRPIQDP
VDILANGQCIGRGDIVRIGDTLGIRLRGRLGCND

Specific function: Could be involved in the secretion of an unknown factor [H]

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001172
- InterPro:   IPR001543
- InterPro:   IPR013385 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 38053; Mature: 38053

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFLAAALVSPPLLEPALTLSHEVASWLNDTAASRGPFQTRINDVPLSVRVAGLVWQENF
CCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEEEEEEEECCC
AAIPMLDCICRVGAETVVLSISRSLVEGLIATVQNGLTFPSEPTASLIVELALEPLIARL
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
EYRTQLNVQLVRVFEAATLAPYLELDIDFGPVSGKGRLFLFSPLDGLVPSAFRALGELFG
HHHHHCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHH
QLPRQPRGLLSDLPIVVAGEIGTLHVPAAILRKACAGDALLPDLAPFGRGEIALSLGQLW
HCCCCCHHHHHCCCEEEECCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHHH
ASADLEGDQLVLHGPFRPRSYSLENAHMTQLGSQLGPTEDLDDVEIMLVFECGRWPIPLG
HCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHH
ELRSAGEGHIFELGRPIQDPVDILANGQCIGRGDIVRIGDTLGIRLRGRLGCND
HHHCCCCCCEEECCCCCCCHHHHHCCCEEECCCCEEEECCCEEEEEECCCCCCC
>Mature Secondary Structure
MQFLAAALVSPPLLEPALTLSHEVASWLNDTAASRGPFQTRINDVPLSVRVAGLVWQENF
CCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEEEEEEEECCC
AAIPMLDCICRVGAETVVLSISRSLVEGLIATVQNGLTFPSEPTASLIVELALEPLIARL
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
EYRTQLNVQLVRVFEAATLAPYLELDIDFGPVSGKGRLFLFSPLDGLVPSAFRALGELFG
HHHHHCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHH
QLPRQPRGLLSDLPIVVAGEIGTLHVPAAILRKACAGDALLPDLAPFGRGEIALSLGQLW
HCCCCCHHHHHCCCEEEECCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHHH
ASADLEGDQLVLHGPFRPRSYSLENAHMTQLGSQLGPTEDLDDVEIMLVFECGRWPIPLG
HCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHH
ELRSAGEGHIFELGRPIQDPVDILANGQCIGRGDIVRIGDTLGIRLRGRLGCND
HHHCCCCCCEEECCCCCCCHHHHHCCCEEECCCCEEEECCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]