Click here to switch to the map view.

The map label for this gene is nolW [H]

Identifier: 13475297

GI number: 13475297

Start: 5153949

End: 5154611

Strand: Reverse

Name: nolW [H]

Synonym: mll6338

Alternate gene names: 13475297

Gene position: 5154611-5153949 (Counterclockwise)

Preceding gene: 13475312

Following gene: 13475296

Centisome position: 73.26

GC content: 56.86

Gene sequence:

>663_bases
TTGAGACTTCTGTGTGCCGGTTTTTTTCTCTCCGCCGGAACCAACGGAACTCTCGGCGTCCCCTTATCCCTCTCCAAGAC
GCCGTACAGATATACGGTTCTCGATCAGGATATTTCTGAGGCGCTGCAGCAATTCGGCAACAACCTTAATATCCGAGTCA
ACATTAGCGCCGAGGTGAAGGGGCGGATCCGCGGGAGTATGCCGGATTTGCCACCGCGCGAGTTCCTCGACCGTTTGGCC
AATATGTACGGTCTCCAATGGTATTATGATGGGCTTGTCCTCTACGTGTCAGCCGCAAAAGAATCACAAACCCGCATGCT
TGTGCTGACTTCGATCCGCTTCGATACGTTTAAGGGTGCCCTAGACAAGCTTGAGATCTCCGATGACCGCTACGTCGTGA
GACCCGCGCCGGGAGATGGCCTCGTTTTGGTTTCCGGTCCGCCGCGCTTCACCGCGCTCGTGGAGCAGACTTTCAATGGT
CTTGTCGCAGAGGCACAGGGGCAGCCGCGCGTCCATGAAACGCCGACAAGCGAATCGGTCCTGACATTGTTTCGGGGTTC
CTCCACCATGGTCGTCCGCAACGGATTGCCTGAAGCCGCTTATTCGTCCGACGTGCCGCAGCAGGATGGCGTTGGCGGGA
AGCCAGAGCCACGCCAAAAATGA

Upstream 100 bases:

>100_bases
GAGGATATGCTGGCGACTAAGTCACTTGTGCAAATTTCAGACTCTAGTGTATCAGTGCGCAATGTTGAGAGCGCTCATCC
GATCCGTCCGCCCACACGTT

Downstream 100 bases:

>100_bases
TATCTGCGGTCGCAGCTTCGGGACAAAACAACACCGCGGCCACCCCAAATTGTGAATTCCTCTGAACTCGTCAGTTTACC
GAAAGCTAAACCGCTCATGG

Product: nodulation protein NOLW

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MRLLCAGFFLSAGTNGTLGVPLSLSKTPYRYTVLDQDISEALQQFGNNLNIRVNISAEVKGRIRGSMPDLPPREFLDRLA
NMYGLQWYYDGLVLYVSAAKESQTRMLVLTSIRFDTFKGALDKLEISDDRYVVRPAPGDGLVLVSGPPRFTALVEQTFNG
LVAEAQGQPRVHETPTSESVLTLFRGSSTMVVRNGLPEAAYSSDVPQQDGVGGKPEPRQK

Sequences:

>Translated_220_residues
MRLLCAGFFLSAGTNGTLGVPLSLSKTPYRYTVLDQDISEALQQFGNNLNIRVNISAEVKGRIRGSMPDLPPREFLDRLA
NMYGLQWYYDGLVLYVSAAKESQTRMLVLTSIRFDTFKGALDKLEISDDRYVVRPAPGDGLVLVSGPPRFTALVEQTFNG
LVAEAQGQPRVHETPTSESVLTLFRGSSTMVVRNGLPEAAYSSDVPQQDGVGGKPEPRQK
>Mature_220_residues
MRLLCAGFFLSAGTNGTLGVPLSLSKTPYRYTVLDQDISEALQQFGNNLNIRVNISAEVKGRIRGSMPDLPPREFLDRLA
NMYGLQWYYDGLVLYVSAAKESQTRMLVLTSIRFDTFKGALDKLEISDDRYVVRPAPGDGLVLVSGPPRFTALVEQTFNG
LVAEAQGQPRVHETPTSESVLTLFRGSSTMVVRNGLPEAAYSSDVPQQDGVGGKPEPRQK

Specific function: Regulates cultivar-specific nodulation of soybean [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24143; Mature: 24143

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLCAGFFLSAGTNGTLGVPLSLSKTPYRYTVLDQDISEALQQFGNNLNIRVNISAEVK
CEEEEEEEEEECCCCCCEEEEEECCCCCEEEEEECHHHHHHHHHHCCCCEEEEEEEEEEE
GRIRGSMPDLPPREFLDRLANMYGLQWYYDGLVLYVSAAKESQTRMLVLTSIRFDTFKGA
EEECCCCCCCCHHHHHHHHHHHHCCCEEECCEEEEEEECCCCCCEEEEEEEEEHHHHHCC
LDKLEISDDRYVVRPAPGDGLVLVSGPPRFTALVEQTFNGLVAEAQGQPRVHETPTSESV
HHEEEECCCCEEEEECCCCCEEEEECCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCE
LTLFRGSSTMVVRNGLPEAAYSSDVPQQDGVGGKPEPRQK
EEEECCCCEEEEECCCCCHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRLLCAGFFLSAGTNGTLGVPLSLSKTPYRYTVLDQDISEALQQFGNNLNIRVNISAEVK
CEEEEEEEEEECCCCCCEEEEEECCCCCEEEEEECHHHHHHHHHHCCCCEEEEEEEEEEE
GRIRGSMPDLPPREFLDRLANMYGLQWYYDGLVLYVSAAKESQTRMLVLTSIRFDTFKGA
EEECCCCCCCCHHHHHHHHHHHHCCCEEECCEEEEEEECCCCCCEEEEEEEEEHHHHHCC
LDKLEISDDRYVVRPAPGDGLVLVSGPPRFTALVEQTFNGLVAEAQGQPRVHETPTSESV
HHEEEECCCCEEEEECCCCCEEEEECCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCE
LTLFRGSSTMVVRNGLPEAAYSSDVPQQDGVGGKPEPRQK
EEEECCCCEEEEECCCCCHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412662 [H]