| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is tnpA [C]
Identifier: 13475285
GI number: 13475285
Start: 5133206
End: 5135473
Strand: Direct
Name: tnpA [C]
Synonym: mlr6323
Alternate gene names: 13475285
Gene position: 5133206-5135473 (Clockwise)
Preceding gene: 13475284
Following gene: 13475286
Centisome position: 72.96
GC content: 61.86
Gene sequence:
>2268_bases ATGCGGGTGCAGCCACGCTGGACAACATGCTTGCCCTGGCTGATCGGCTTGCCTTCATCAAGAAGCTGGATTTACCGCGG GATCTTCTATCCGCTGCCGGCAAGACCTGGATCGATCAGATCGTTCGGCGGGTCGGCGCCGAAAAAGCGTCGGAGATGCG CCGCCACGCCCCGAGGCGGCAACTGGGGCCTCCATACCGTTTTCCTGATGATGCGGGAAGCACAGATCATCGACGGCATG ATCGACCTGCTGGTGGAGACCATCCACAAGATCGGGGTGCGTTCGAAGCGCAAGGTGGTGGGCGGCATCGCGCGTGACAT CGAGAAGGTTTACGGCATGGAGCGGCTGCTGGTCGATATCGCGGGTGCCGCGATCGAGGCGCCGGGTGGCCGGGTCTGCG ATGTGATCTTTCCGGTAGCGGGCAAGGAGAAGCTTGCGGCGATCGTCAAGGAGCATCGGGCGAAGGGCACGCTCGAACGG CGCATCTACCAGGTTATGCGTGGATCCTATGCCGGTCACTATCGAAGAATCCTGCCGAAGCTTCTTTCGGTTCTGGAGTT TCGTTCGAACAATGCCGTGCATCGGCCCGTGCTTGGGGCGTTGGACTGGATCAGGCGGGCCTTCGAAACCGGTTGCCGCG TGGTGCCGCGGAACGGGGTGCCGATCGAAGGCGTCATTCCGCCGAAATGCCGCGGCGCGATCATCGGCAAGGACGGACGC ATCAACCGGATCAGCTATGAACTGTGCGTGCTCAGTCAGTTGCGCGACCGCATCCGGGCCAAGGAAATCTGGGTGGTCGG GGCGGACCACTATCGCAATCCGGACGACGATCTGCCCAAGGATTTCGAGAGCCGACGGGCGGCCTACTACAACGCGCTCA ACCTGACGTCGGATGCGCGAGCTTTCACGCGCAAAATCCAGGCCGAGCTTGAGCGGGAATTGCGGCTGCTGAATGCCGAA CTCCCCCGCAACGACAAGGCACGCATTCTCTGGCGCGGCGAGAACCGCATCTCGATCACGCCGTTCCAGCCGCTGCCGGA ACCGCAAGGCCTACGATCGGTCAAGGCCGAGATCGGCCGGCGTTGGCCGATGACGGAACTGCTGGATGTGTTGAAGGAGA CGGCGCTCGACACCGGCTTTCTGGACGCCTTTGAAACGTCGGCTTCTCGTGTGGCGCTTTCGCGCGGTGCGCTCGACCGG CGTCTGATCCTGTGTCTTTACGGGCTGGGCACGAATGCCGGCCTGAAGCGCGTGGCGGCCGGATGCCCGGATGTCAGCTA CGAGGAACTGCTTCATGTTGGCCGGCGCTTCATCCATCGGGATGCGCTGGAGGCGGCCTGCGGACGTGTTGCCAATGCGA CGCTGGCAATCCGCAACACCGCCATCTGGGGCGAAGCCGGCACGGCTTGTGCCTCGGATTCCAAGAAATTCGGCGCCTGG GACGGCAACCTTATGACCGAATGGCATGTCCGCTATGGCGGTCGCGGCGTGATGATCTACTGGCACGTCGAAAAGGGTTC AACCTGCGTCTTCTCGCAACTCAAGCGGTGCTCGTCCTCGGAAGTTGCTTCGATGATCAAGGGCGTGCTTCGGCATTGCA CCGACATGGAGATCCAGCGGCAGTATGTCGACAGCCACGGCCAGAGCTCGATCGGCTTTGCCTTCTGCCATCTGCTCGGG TTTGAACTGGCGCCACGCCTTAAGGCGATCGCCCGGCAGACGCTGGCGCTGCCGCATCCAGGCCTGCGCGCTTGCCCAAT CTGCTTCCCATTCTTTCCAGCGTCATCAACTGGGAGGAGATCGAGCAGAATGCACAGCGGGTTAGCCGATCCCGAAGCGA TCCTGCGCCGCTTCGCCCGCGCCGAGGTGATGCACCCGACCTATAAGGCACTCGCCGAACTCGGCCGGGCGATCAAGACG ATCTTCCTTTGCCGGTATTTGCGCCACGAGAAATTCCGCCGCGAAATCCACGAAGGCCTGAATGTGATCGAGAACTGGAA CAGCGCCAACAGCTTCGTCTTCTTCGGCAAGGGTGGCGAGATCGCCTCGAACCGGCTCGATGAGCAGGAGATCTCGGTGC TGGCCCTGCATCTGCTGCAGGCGTCGCTTGTCTATGTGAACACGCGCATGATGCAGTCGGTGTTGAGCGAGCCGAAATGG TCGGCGCGGCTAACGCCGGAGGATTATCGCGGCCTGACGCCGCTGATACGGTCACGTCAATCCTTATGGCCGCTTCAACC TCGACCTGAACAGCAGGATCGATTTTGA
Upstream 100 bases:
>100_bases GGCGGTGTTGCGGATCGGCTTCGCCCGGAAACGGTCGCGCTGATGCAAACATCGCTGGCCGATCCAGATAGCCCGACCGG GTTCCATACAATCAAAGGAG
Downstream 100 bases:
>100_bases GCAGAAACAAGCGGCGTGAAGCATCGAAGGGAATGGTAGAAATGCCTGTATCGAAGAAGCCCCGAAAGAAGGCAGTGGCG AAATCCAAGAAGCCGGAAAA
Product: putative resolvase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 755; Mature: 755
Protein sequence:
>755_residues MRVQPRWTTCLPWLIGLPSSRSWIYRGIFYPLPARPGSIRSFGGSAPKKRRRCAATPRGGNWGLHTVFLMMREAQIIDGM IDLLVETIHKIGVRSKRKVVGGIARDIEKVYGMERLLVDIAGAAIEAPGGRVCDVIFPVAGKEKLAAIVKEHRAKGTLER RIYQVMRGSYAGHYRRILPKLLSVLEFRSNNAVHRPVLGALDWIRRAFETGCRVVPRNGVPIEGVIPPKCRGAIIGKDGR INRISYELCVLSQLRDRIRAKEIWVVGADHYRNPDDDLPKDFESRRAAYYNALNLTSDARAFTRKIQAELERELRLLNAE LPRNDKARILWRGENRISITPFQPLPEPQGLRSVKAEIGRRWPMTELLDVLKETALDTGFLDAFETSASRVALSRGALDR RLILCLYGLGTNAGLKRVAAGCPDVSYEELLHVGRRFIHRDALEAACGRVANATLAIRNTAIWGEAGTACASDSKKFGAW DGNLMTEWHVRYGGRGVMIYWHVEKGSTCVFSQLKRCSSSEVASMIKGVLRHCTDMEIQRQYVDSHGQSSIGFAFCHLLG FELAPRLKAIARQTLALPHPGLRACPICFPFFPASSTGRRSSRMHSGLADPEAILRRFARAEVMHPTYKALAELGRAIKT IFLCRYLRHEKFRREIHEGLNVIENWNSANSFVFFGKGGEIASNRLDEQEISVLALHLLQASLVYVNTRMMQSVLSEPKW SARLTPEDYRGLTPLIRSRQSLWPLQPRPEQQDRF
Sequences:
>Translated_755_residues MRVQPRWTTCLPWLIGLPSSRSWIYRGIFYPLPARPGSIRSFGGSAPKKRRRCAATPRGGNWGLHTVFLMMREAQIIDGM IDLLVETIHKIGVRSKRKVVGGIARDIEKVYGMERLLVDIAGAAIEAPGGRVCDVIFPVAGKEKLAAIVKEHRAKGTLER RIYQVMRGSYAGHYRRILPKLLSVLEFRSNNAVHRPVLGALDWIRRAFETGCRVVPRNGVPIEGVIPPKCRGAIIGKDGR INRISYELCVLSQLRDRIRAKEIWVVGADHYRNPDDDLPKDFESRRAAYYNALNLTSDARAFTRKIQAELERELRLLNAE LPRNDKARILWRGENRISITPFQPLPEPQGLRSVKAEIGRRWPMTELLDVLKETALDTGFLDAFETSASRVALSRGALDR RLILCLYGLGTNAGLKRVAAGCPDVSYEELLHVGRRFIHRDALEAACGRVANATLAIRNTAIWGEAGTACASDSKKFGAW DGNLMTEWHVRYGGRGVMIYWHVEKGSTCVFSQLKRCSSSEVASMIKGVLRHCTDMEIQRQYVDSHGQSSIGFAFCHLLG FELAPRLKAIARQTLALPHPGLRACPICFPFFPASSTGRRSSRMHSGLADPEAILRRFARAEVMHPTYKALAELGRAIKT IFLCRYLRHEKFRREIHEGLNVIENWNSANSFVFFGKGGEIASNRLDEQEISVLALHLLQASLVYVNTRMMQSVLSEPKW SARLTPEDYRGLTPLIRSRQSLWPLQPRPEQQDRF >Mature_755_residues MRVQPRWTTCLPWLIGLPSSRSWIYRGIFYPLPARPGSIRSFGGSAPKKRRRCAATPRGGNWGLHTVFLMMREAQIIDGM IDLLVETIHKIGVRSKRKVVGGIARDIEKVYGMERLLVDIAGAAIEAPGGRVCDVIFPVAGKEKLAAIVKEHRAKGTLER RIYQVMRGSYAGHYRRILPKLLSVLEFRSNNAVHRPVLGALDWIRRAFETGCRVVPRNGVPIEGVIPPKCRGAIIGKDGR INRISYELCVLSQLRDRIRAKEIWVVGADHYRNPDDDLPKDFESRRAAYYNALNLTSDARAFTRKIQAELERELRLLNAE LPRNDKARILWRGENRISITPFQPLPEPQGLRSVKAEIGRRWPMTELLDVLKETALDTGFLDAFETSASRVALSRGALDR RLILCLYGLGTNAGLKRVAAGCPDVSYEELLHVGRRFIHRDALEAACGRVANATLAIRNTAIWGEAGTACASDSKKFGAW DGNLMTEWHVRYGGRGVMIYWHVEKGSTCVFSQLKRCSSSEVASMIKGVLRHCTDMEIQRQYVDSHGQSSIGFAFCHLLG FELAPRLKAIARQTLALPHPGLRACPICFPFFPASSTGRRSSRMHSGLADPEAILRRFARAEVMHPTYKALAELGRAIKT IFLCRYLRHEKFRREIHEGLNVIENWNSANSFVFFGKGGEIASNRLDEQEISVLALHLLQASLVYVNTRMMQSVLSEPKW SARLTPEDYRGLTPLIRSRQSLWPLQPRPEQQDRF
Specific function: Required for transposition of transposon Tn1546 [H]
COG id: COG4644
COG function: function code L; Transposase and inactivated derivatives, TnpA family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 7 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002513 [H]
Pfam domain/function: PF01526 Transposase_7 [H]
EC number: NA
Molecular weight: Translated: 85142; Mature: 85142
Theoretical pI: Translated: 10.44; Mature: 10.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVQPRWTTCLPWLIGLPSSRSWIYRGIFYPLPARPGSIRSFGGSAPKKRRRCAATPRGG CCCCCCHHHHHHHHHCCCCCCCEEEECEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCC NWGLHTVFLMMREAQIIDGMIDLLVETIHKIGVRSKRKVVGGIARDIEKVYGMERLLVDI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AGAAIEAPGGRVCDVIFPVAGKEKLAAIVKEHRAKGTLERRIYQVMRGSYAGHYRRILPK HCCCEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHH LLSVLEFRSNNAVHRPVLGALDWIRRAFETGCRVVPRNGVPIEGVIPPKCRGAIIGKDGR HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCEEECCCCC INRISYELCVLSQLRDRIRAKEIWVVGADHYRNPDDDLPKDFESRRAAYYNALNLTSDAR CCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH AFTRKIQAELERELRLLNAELPRNDKARILWRGENRISITPFQPLPEPQGLRSVKAEIGR HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEECCCCCCCCCCHHHHHHHHHCC RWPMTELLDVLKETALDTGFLDAFETSASRVALSRGALDRRLILCLYGLGTNAGLKRVAA CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHEEHHHEECCCCCHHHHHHHC GCPDVSYEELLHVGRRFIHRDALEAACGRVANATLAIRNTAIWGEAGTACASDSKKFGAW CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCCC DGNLMTEWHVRYGGRGVMIYWHVEKGSTCVFSQLKRCSSSEVASMIKGVLRHCTDMEIQR CCCCEEEEEEEECCCEEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHH QYVDSHGQSSIGFAFCHLLGFELAPRLKAIARQTLALPHPGLRACPICFPFFPASSTGRR HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCH SSRMHSGLADPEAILRRFARAEVMHPTYKALAELGRAIKTIFLCRYLRHEKFRREIHEGL HHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NVIENWNSANSFVFFGKGGEIASNRLDEQEISVLALHLLQASLVYVNTRMMQSVLSEPKW HHHHCCCCCCCEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SARLTPEDYRGLTPLIRSRQSLWPLQPRPEQQDRF CCCCCCHHHCCCCHHHHCHHHCCCCCCCCCCCCCC >Mature Secondary Structure MRVQPRWTTCLPWLIGLPSSRSWIYRGIFYPLPARPGSIRSFGGSAPKKRRRCAATPRGG CCCCCCHHHHHHHHHCCCCCCCEEEECEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCC NWGLHTVFLMMREAQIIDGMIDLLVETIHKIGVRSKRKVVGGIARDIEKVYGMERLLVDI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AGAAIEAPGGRVCDVIFPVAGKEKLAAIVKEHRAKGTLERRIYQVMRGSYAGHYRRILPK HCCCEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHH LLSVLEFRSNNAVHRPVLGALDWIRRAFETGCRVVPRNGVPIEGVIPPKCRGAIIGKDGR HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCEEECCCCC INRISYELCVLSQLRDRIRAKEIWVVGADHYRNPDDDLPKDFESRRAAYYNALNLTSDAR CCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH AFTRKIQAELERELRLLNAELPRNDKARILWRGENRISITPFQPLPEPQGLRSVKAEIGR HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEECCCCCCCCCCHHHHHHHHHCC RWPMTELLDVLKETALDTGFLDAFETSASRVALSRGALDRRLILCLYGLGTNAGLKRVAA CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHEEHHHEECCCCCHHHHHHHC GCPDVSYEELLHVGRRFIHRDALEAACGRVANATLAIRNTAIWGEAGTACASDSKKFGAW CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCCC DGNLMTEWHVRYGGRGVMIYWHVEKGSTCVFSQLKRCSSSEVASMIKGVLRHCTDMEIQR CCCCEEEEEEEECCCEEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHH QYVDSHGQSSIGFAFCHLLGFELAPRLKAIARQTLALPHPGLRACPICFPFFPASSTGRR HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCH SSRMHSGLADPEAILRRFARAEVMHPTYKALAELGRAIKTIFLCRYLRHEKFRREIHEGL HHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NVIENWNSANSFVFFGKGGEIASNRLDEQEISVLALHLLQASLVYVNTRMMQSVLSEPKW HHHHCCCCCCCEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SARLTPEDYRGLTPLIRSRQSLWPLQPRPEQQDRF CCCCCCHHHCCCCHHHHCHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8380148 [H]