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The map label for this gene is ypdF [C]

Identifier: 13475194

GI number: 13475194

Start: 5035595

End: 5036770

Strand: Direct

Name: ypdF [C]

Synonym: mlr6218

Alternate gene names: 13475194

Gene position: 5035595-5036770 (Clockwise)

Preceding gene: 13475193

Following gene: 13475195

Centisome position: 71.57

GC content: 59.27

Gene sequence:

>1176_bases
ATGAAGGAGCCTACTACAGTGAGTGAGTCCGCGAACAATGGGATTGATTTCCCCGCTGAAGAATATCGTACACGACTGCA
GCGCACACAAGAAGAGATGGCCAAGCATGATCTTCCCGTCTTACTGCTGCACCAACCGGAAAACATCAACTATCTGAGCG
GTCTGGATGACATTGGCTACTTTTCCTATCACGCGTTGGCGGTTCCCAGTCGCGGTGACCCCGTGCTGATCGTGCGCGAT
ATGGAAGTCCCCACGGCGCACAGCACCTCGTGGGTCAAGAACCATACGGTCTATGCAGACGCCGCCGATCCGATCCCCGC
TTCGCTAGACGCGGCGCGAAGGGCCCTCGATGGTCTTGGGCTGGCAGGCGGGCGCGTCGGCGTGGACGAGCACTCATGGT
TCTTGACCGTGGAACGCTGGAAGATGCTTCAGGCGCAGCTACCGAATGCAACTTTGGCCAAAGAGCCGCGCATTGTCGAC
CACCTGCGTCTGATCAAATCGCCGCGGGAAATAGAATATCTGCGCGGCGCTGCCCGCCAAGTCGAAGTGGGCATGCTCGC
TGGCATCGAGGCCATTGCGCCGGGCGTCACGGAGCGAGATCTTGCTAGCGTAGTGTCAAGCGCATTTGTCAAGGCCGGCG
CGGACATGCGGAGCGGTGGCATCATCACCTCCGGCAGTCGAACGAATCTCATACACGGAGGCTCTTCCAACCGGCGCCTC
GAACGGGGCGATCCTGTCTACTTTGAGCTCGAAGGAATCCATCGAAAGTATTACTCACGCTTAATGCGCACCGCAGTGGT
TGGTCCGGCGAGCGCTGAGCAGCAGCGTGTCGCCCAGACAATCATCCGTACCCAGGACGAGGCCATCGCGTTGATGCGTC
CGGGCACGCCGGCCAGCGTGATCGACCGAGCCTGCCGCGAGCCGATTCTGACGGCTGGTCTGCGCAAGACATACACGAAC
CGCACCGGCTATTCGCTCGCTCTCTGTGAAAGCCCCTCCGCCGGTGAATTCATCCGTGAGTTCGTGCCAGGTGTGGAATG
GGTTCTAGAGGCTGGAATGGTGTTTCATATGCTGATGATGGCGGCAGGCATGGGCTTTAGCGAGACGGTCCTAGTGACCG
AACGAGGCCCGGAACGCCTAACTACCATGGAGCGCAAACTCTTCTCGCGTAATTGA

Upstream 100 bases:

>100_bases
CCCTGTCTTCTCATCGCATTCACAGTCGTTGTCTATGCTAGCGTAGAAGCGATCCGCCAAGCGGGTGAACGGCGAACAGA
CTTAGTTGAAGTAGTCAATA

Downstream 100 bases:

>100_bases
AGTCCATCCACGATGGCCACGCTCATGCGAGCGGTCATAGTCATCGTCAGCGAATTCGATGGACTCTGTGACAAACCATA
TGTAGTCGCAATCGAAACGC

Product: dipeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MKEPTTVSESANNGIDFPAEEYRTRLQRTQEEMAKHDLPVLLLHQPENINYLSGLDDIGYFSYHALAVPSRGDPVLIVRD
MEVPTAHSTSWVKNHTVYADAADPIPASLDAARRALDGLGLAGGRVGVDEHSWFLTVERWKMLQAQLPNATLAKEPRIVD
HLRLIKSPREIEYLRGAARQVEVGMLAGIEAIAPGVTERDLASVVSSAFVKAGADMRSGGIITSGSRTNLIHGGSSNRRL
ERGDPVYFELEGIHRKYYSRLMRTAVVGPASAEQQRVAQTIIRTQDEAIALMRPGTPASVIDRACREPILTAGLRKTYTN
RTGYSLALCESPSAGEFIREFVPGVEWVLEAGMVFHMLMMAAGMGFSETVLVTERGPERLTTMERKLFSRN

Sequences:

>Translated_391_residues
MKEPTTVSESANNGIDFPAEEYRTRLQRTQEEMAKHDLPVLLLHQPENINYLSGLDDIGYFSYHALAVPSRGDPVLIVRD
MEVPTAHSTSWVKNHTVYADAADPIPASLDAARRALDGLGLAGGRVGVDEHSWFLTVERWKMLQAQLPNATLAKEPRIVD
HLRLIKSPREIEYLRGAARQVEVGMLAGIEAIAPGVTERDLASVVSSAFVKAGADMRSGGIITSGSRTNLIHGGSSNRRL
ERGDPVYFELEGIHRKYYSRLMRTAVVGPASAEQQRVAQTIIRTQDEAIALMRPGTPASVIDRACREPILTAGLRKTYTN
RTGYSLALCESPSAGEFIREFVPGVEWVLEAGMVFHMLMMAAGMGFSETVLVTERGPERLTTMERKLFSRN
>Mature_391_residues
MKEPTTVSESANNGIDFPAEEYRTRLQRTQEEMAKHDLPVLLLHQPENINYLSGLDDIGYFSYHALAVPSRGDPVLIVRD
MEVPTAHSTSWVKNHTVYADAADPIPASLDAARRALDGLGLAGGRVGVDEHSWFLTVERWKMLQAQLPNATLAKEPRIVD
HLRLIKSPREIEYLRGAARQVEVGMLAGIEAIAPGVTERDLASVVSSAFVKAGADMRSGGIITSGSRTNLIHGGSSNRRL
ERGDPVYFELEGIHRKYYSRLMRTAVVGPASAEQQRVAQTIIRTQDEAIALMRPGTPASVIDRACREPILTAGLRKTYTN
RTGYSLALCESPSAGEFIREFVPGVEWVLEAGMVFHMLMMAAGMGFSETVLVTERGPERLTTMERKLFSRN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24 family [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=291, Percent_Identity=29.8969072164948, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 43128; Mature: 43128

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEPTTVSESANNGIDFPAEEYRTRLQRTQEEMAKHDLPVLLLHQPENINYLSGLDDIGY
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHCCCCCCCH
FSYHALAVPSRGDPVLIVRDMEVPTAHSTSWVKNHTVYADAADPIPASLDAARRALDGLG
HEEEEEECCCCCCCEEEEECCCCCCCCCCCHHHCCEEEECCCCCCCCHHHHHHHHHHCCC
LAGGRVGVDEHSWFLTVERWKMLQAQLPNATLAKEPRIVDHLRLIKSPREIEYLRGAARQ
CCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
VEVGMLAGIEAIAPGVTERDLASVVSSAFVKAGADMRSGGIITSGSRTNLIHGGSSNRRL
HHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEECCCCCCCC
ERGDPVYFELEGIHRKYYSRLMRTAVVGPASAEQQRVAQTIIRTQDEAIALMRPGTPASV
CCCCCEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHH
IDRACREPILTAGLRKTYTNRTGYSLALCESPSAGEFIREFVPGVEWVLEAGMVFHMLMM
HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHHH
AAGMGFSETVLVTERGPERLTTMERKLFSRN
HHCCCCCCEEEEECCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MKEPTTVSESANNGIDFPAEEYRTRLQRTQEEMAKHDLPVLLLHQPENINYLSGLDDIGY
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHCCCCCCCH
FSYHALAVPSRGDPVLIVRDMEVPTAHSTSWVKNHTVYADAADPIPASLDAARRALDGLG
HEEEEEECCCCCCCEEEEECCCCCCCCCCCHHHCCEEEECCCCCCCCHHHHHHHHHHCCC
LAGGRVGVDEHSWFLTVERWKMLQAQLPNATLAKEPRIVDHLRLIKSPREIEYLRGAARQ
CCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
VEVGMLAGIEAIAPGVTERDLASVVSSAFVKAGADMRSGGIITSGSRTNLIHGGSSNRRL
HHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCEEECCCCCCCC
ERGDPVYFELEGIHRKYYSRLMRTAVVGPASAEQQRVAQTIIRTQDEAIALMRPGTPASV
CCCCCEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHH
IDRACREPILTAGLRKTYTNRTGYSLALCESPSAGEFIREFVPGVEWVLEAGMVFHMLMM
HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHHH
AAGMGFSETVLVTERGPERLTTMERKLFSRN
HHCCCCCCEEEEECCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]