Click here to switch to the map view.

The map label for this gene is yagA [C]

Identifier: 13475082

GI number: 13475082

Start: 4927109

End: 4927948

Strand: Reverse

Name: yagA [C]

Synonym: mll6088

Alternate gene names: 13475082

Gene position: 4927948-4927109 (Counterclockwise)

Preceding gene: 13475084

Following gene: 13475070

Centisome position: 70.04

GC content: 60.95

Gene sequence:

>840_bases
GTGAGGCCTGGTCGCAAACGCGAGCTGGTGGCGGATACCTGTACTGAGTGGAACGTGTCGATCCGGCGTGCCTGCCGGGT
TCTGGAGTTCGACACATCGACCTATCACTACAAGTCCCGTCGCCGCGATCAGGCCGGCATCGAAGCTCGGATCAAAGACA
TTTGTGCAACGCGGGTTCGTTATGGCTACCGGCGCGTGCACGTGATGCTCACGCGCGAGGGCTGGGACATCAACATGAAG
CGGACCTATCGGATTTACAGGGACTTAGGGCTTCAACTGCGGAACAAGACGCCGAAACGGCGCGTGAAGGCGAAGCTACG
AGATGATCGTCAGCCGGCCGTCGAGCCCAACGACGTGTGGGCGATGGACTTCGTTCACGACCAGCTCGCGACCGGCAAGA
AGATCCGCGTGCTGACGGTCGTCGATACGTTCTCGCGCTACGTGCCGGTGCTCGACCCGCGCTTCAGTTACCGAGCAGAG
GACGGGGTCAGGACGCTGGAACAAGTCTGTCCTCGGATCGGCTATCCGAAGACGATCAGGGTCGATCAGGGCACGGAGTT
CGTGTCCCGCGACCTCGATCTGTGGGCCTACACCAAGGGCGTTACGCTCGACTTCTCGCGCCCGGGAAAGCCAACCGACA
ACGCCTACATCGAAGCTTTCAACGGCCGCTTCAGGGCGGAGTGCCTGAATGCCCACTGGTTCCTGACGCTTGCCGACGCG
GCCAAAAAGTTGGAGGATTGGCGCAGATACTACAACGAGGTGCGCCCACATGGTGCAATCGGACACAAGGTCCCGATCTC
GTTGATCAATCCCGATGGCGCCACCAGCCCGCCATCGTGA

Upstream 100 bases:

>100_bases
GACTGAAGCAGCTTGAGGATGAGAACGGCAAGCTCAGGAAGCTGGTCGCCGACCTGTCGCTGGACAAGGAGATGCTGCAG
GACGTGATCCGCCGAAAACT

Downstream 100 bases:

>100_bases
AGCAGCCGGGAAACTCCACCTTCCGGCGGTCCAAAGAACGGTATCGGATCAGAAACGGCCAAGGCTCTAATCGCCGCTGG
ATGAATGTTCAGTGGCAGGT

Product: transposase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MRPGRKRELVADTCTEWNVSIRRACRVLEFDTSTYHYKSRRRDQAGIEARIKDICATRVRYGYRRVHVMLTREGWDINMK
RTYRIYRDLGLQLRNKTPKRRVKAKLRDDRQPAVEPNDVWAMDFVHDQLATGKKIRVLTVVDTFSRYVPVLDPRFSYRAE
DGVRTLEQVCPRIGYPKTIRVDQGTEFVSRDLDLWAYTKGVTLDFSRPGKPTDNAYIEAFNGRFRAECLNAHWFLTLADA
AKKLEDWRRYYNEVRPHGAIGHKVPISLINPDGATSPPS

Sequences:

>Translated_279_residues
MRPGRKRELVADTCTEWNVSIRRACRVLEFDTSTYHYKSRRRDQAGIEARIKDICATRVRYGYRRVHVMLTREGWDINMK
RTYRIYRDLGLQLRNKTPKRRVKAKLRDDRQPAVEPNDVWAMDFVHDQLATGKKIRVLTVVDTFSRYVPVLDPRFSYRAE
DGVRTLEQVCPRIGYPKTIRVDQGTEFVSRDLDLWAYTKGVTLDFSRPGKPTDNAYIEAFNGRFRAECLNAHWFLTLADA
AKKLEDWRRYYNEVRPHGAIGHKVPISLINPDGATSPPS
>Mature_279_residues
MRPGRKRELVADTCTEWNVSIRRACRVLEFDTSTYHYKSRRRDQAGIEARIKDICATRVRYGYRRVHVMLTREGWDINMK
RTYRIYRDLGLQLRNKTPKRRVKAKLRDDRQPAVEPNDVWAMDFVHDQLATGKKIRVLTVVDTFSRYVPVLDPRFSYRAE
DGVRTLEQVCPRIGYPKTIRVDQGTEFVSRDLDLWAYTKGVTLDFSRPGKPTDNAYIEAFNGRFRAECLNAHWFLTLADA
AKKLEDWRRYYNEVRPHGAIGHKVPISLINPDGATSPPS

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=173, Percent_Identity=30.635838150289, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1789981, Length=264, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 32609; Mature: 32609

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPGRKRELVADTCTEWNVSIRRACRVLEFDTSTYHYKSRRRDQAGIEARIKDICATRVR
CCCCCCCHHHHHHCCCCCHHHHHHHHHEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHH
YGYRRVHVMLTREGWDINMKRTYRIYRDLGLQLRNKTPKRRVKAKLRDDRQPAVEPNDVW
HCEEEEEEEEEECCCCCCHHHHHHHHHHHCHHHCCCCHHHHHHHHHCCCCCCCCCCCCEE
AMDFVHDQLATGKKIRVLTVVDTFSRYVPVLDPRFSYRAEDGVRTLEQVCPRIGYPKTIR
EHHHHHHHHCCCCEEEEEEEEHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
VDQGTEFVSRDLDLWAYTKGVTLDFSRPGKPTDNAYIEAFNGRFRAECLNAHWFLTLADA
ECCCCHHHHCCCCEEEEECCCEEECCCCCCCCCCCEEEECCCCEEEEEECCEEEEEHHHH
AKKLEDWRRYYNEVRPHGAIGHKVPISLINPDGATSPPS
HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure
MRPGRKRELVADTCTEWNVSIRRACRVLEFDTSTYHYKSRRRDQAGIEARIKDICATRVR
CCCCCCCHHHHHHCCCCCHHHHHHHHHEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHH
YGYRRVHVMLTREGWDINMKRTYRIYRDLGLQLRNKTPKRRVKAKLRDDRQPAVEPNDVW
HCEEEEEEEEEECCCCCCHHHHHHHHHHHCHHHCCCCHHHHHHHHHCCCCCCCCCCCCEE
AMDFVHDQLATGKKIRVLTVVDTFSRYVPVLDPRFSYRAEDGVRTLEQVCPRIGYPKTIR
EHHHHHHHHCCCCEEEEEEEEHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
VDQGTEFVSRDLDLWAYTKGVTLDFSRPGKPTDNAYIEAFNGRFRAECLNAHWFLTLADA
ECCCCHHHHCCCCEEEEECCCEEECCCCCCCCCCCEEEECCCCEEEEEECCEEEEEHHHH
AKKLEDWRRYYNEVRPHGAIGHKVPISLINPDGATSPPS
HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]