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The map label for this gene is ypdF [C]

Identifier: 13474984

GI number: 13474984

Start: 4829691

End: 4830860

Strand: Reverse

Name: ypdF [C]

Synonym: mll5970

Alternate gene names: 13474984

Gene position: 4830860-4829691 (Counterclockwise)

Preceding gene: 13474985

Following gene: 13474980

Centisome position: 68.66

GC content: 54.62

Gene sequence:

>1170_bases
ATGCCAATACCCAAAGGCCTCCAGGCGTTCCCACGGGCTGAATACCTACGACGGCTCTCCGCAGTTAAGGCGGAAATGGG
CCGACGCGAGACCAACACGTTAATCGTCACCACTTCGGCCGACATTACCTATCTTTCAGGATACACCTGCAAATCAGGAT
ACGTGCCGCAGGGCCTGATAATTTCCTTGGCGGAGGAAGAGCCAACGTTCGTGGCGCGGCGCTGTGATGCGCCGGCGGCA
ATGCATCAGATGTTTATCGACAGCGGCCGGGTCATTGGCTATCCAGAGGCACTTATTGCTAACCCAAGAGCCGATGGCTT
TGATGCGATGATCGACTTCCTGCGTCAAAACGGCCTTGCGAAAGGCAGGATAGGGCTCGAGACCAAGTCCCTTCGTTCTG
AAACTGTCGAAAAATTCAAGGCTAGAATGTCTGCTGTCGCGATTGTGGATTTTAGCAACACAATCGCTTGGATTCGGTTG
GCTAAGTCCGATCTCGAAATTGCGGTAATGCGGGAGGCGGCGGCCATCACTGATGCAGGAATGCTACGGGCGAAGGAAGT
GATCCGACCGGGAGTAAGAGAGGCTGATGCTGCCGCAGAGATCATTTCGACGTTGATCCGCGGTGCCGATGGTAAGCCAG
GTACCGATTTAGCTGGCTTCTACCTATGTGCCTCACCTCGTTCGGCTACGGCTCACGTTCATTGGAGCGAAGATGTTTTC
CGGGACGGGTCCCAGATCAATCTAGAGTTTGGCGGTGTTCGTCACGGGTATGTTTCTGGCCTTATGCGCACGTTCTCAAT
CGGCGAGCCCTCGGATCGCCTGCGTCGAGTTCATGAAGCTGAAGTTGCCGGGTTGGAATCCGCGCTTGCCGCTGTTAAGC
TTGGTGTCACGTGCGGAGACATTGCTACGGCCTTCAACAAGACGCTAAGAAGGCATGGCTTCGACAAAGAAACCCGATGC
GGCTACGCTATTGGGATCGATTGGCTGGAACCAACAGCCAGCCTAAAGGAGAATGACGAGACTGTGCTGCAAACGAACAT
GACCTTTCACCTGATGCTCGGAAATTGGATCGACGAGGATTTCGGGTACGTGATCAGCGAAACGTTTCGGGTTACCGAGC
GGGGCGCCGAAACCTTCTCATGCCTGCCGCGTGAAATCTTCGAAATCTGA

Upstream 100 bases:

>100_bases
CCAGCCTCGCAGATGCTGGGGCGCGCGTCGTTGCCCAGCATCGCCTCACGCTCCAACCGAAACCGCATTCGACAAAAAAC
AAAAAAGGAATTAAAATTAC

Downstream 100 bases:

>100_bases
TTGCAAGCGTGGTTCGGTGATCGACTTGACCTTCCGGGTCGATACCCCTTCCACATACATCTCCGCAAGATCGCCACCAA
GGGTGGCACTCGAACAGTTC

Product: putative peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MPIPKGLQAFPRAEYLRRLSAVKAEMGRRETNTLIVTTSADITYLSGYTCKSGYVPQGLIISLAEEEPTFVARRCDAPAA
MHQMFIDSGRVIGYPEALIANPRADGFDAMIDFLRQNGLAKGRIGLETKSLRSETVEKFKARMSAVAIVDFSNTIAWIRL
AKSDLEIAVMREAAAITDAGMLRAKEVIRPGVREADAAAEIISTLIRGADGKPGTDLAGFYLCASPRSATAHVHWSEDVF
RDGSQINLEFGGVRHGYVSGLMRTFSIGEPSDRLRRVHEAEVAGLESALAAVKLGVTCGDIATAFNKTLRRHGFDKETRC
GYAIGIDWLEPTASLKENDETVLQTNMTFHLMLGNWIDEDFGYVISETFRVTERGAETFSCLPREIFEI

Sequences:

>Translated_389_residues
MPIPKGLQAFPRAEYLRRLSAVKAEMGRRETNTLIVTTSADITYLSGYTCKSGYVPQGLIISLAEEEPTFVARRCDAPAA
MHQMFIDSGRVIGYPEALIANPRADGFDAMIDFLRQNGLAKGRIGLETKSLRSETVEKFKARMSAVAIVDFSNTIAWIRL
AKSDLEIAVMREAAAITDAGMLRAKEVIRPGVREADAAAEIISTLIRGADGKPGTDLAGFYLCASPRSATAHVHWSEDVF
RDGSQINLEFGGVRHGYVSGLMRTFSIGEPSDRLRRVHEAEVAGLESALAAVKLGVTCGDIATAFNKTLRRHGFDKETRC
GYAIGIDWLEPTASLKENDETVLQTNMTFHLMLGNWIDEDFGYVISETFRVTERGAETFSCLPREIFEI
>Mature_388_residues
PIPKGLQAFPRAEYLRRLSAVKAEMGRRETNTLIVTTSADITYLSGYTCKSGYVPQGLIISLAEEEPTFVARRCDAPAAM
HQMFIDSGRVIGYPEALIANPRADGFDAMIDFLRQNGLAKGRIGLETKSLRSETVEKFKARMSAVAIVDFSNTIAWIRLA
KSDLEIAVMREAAAITDAGMLRAKEVIRPGVREADAAAEIISTLIRGADGKPGTDLAGFYLCASPRSATAHVHWSEDVFR
DGSQINLEFGGVRHGYVSGLMRTFSIGEPSDRLRRVHEAEVAGLESALAAVKLGVTCGDIATAFNKTLRRHGFDKETRCG
YAIGIDWLEPTASLKENDETVLQTNMTFHLMLGNWIDEDFGYVISETFRVTERGAETFSCLPREIFEI

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24 family [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=273, Percent_Identity=24.5421245421245, Blast_Score=75, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 42783; Mature: 42652

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIPKGLQAFPRAEYLRRLSAVKAEMGRRETNTLIVTTSADITYLSGYTCKSGYVPQGLI
CCCCCCCHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCEE
ISLAEEEPTFVARRCDAPAAMHQMFIDSGRVIGYPEALIANPRADGFDAMIDFLRQNGLA
EEECCCCCCHHHHHCCCHHHHHHHHHHCCCEECCCHHHHCCCCCCCHHHHHHHHHHCCCC
KGRIGLETKSLRSETVEKFKARMSAVAIVDFSNTIAWIRLAKSDLEIAVMREAAAITDAG
CCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEEECCCCEEEEHHHHHHHHHHH
MLRAKEVIRPGVREADAAAEIISTLIRGADGKPGTDLAGFYLCASPRSATAHVHWSEDVF
HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEEEECHHHH
RDGSQINLEFGGVRHGYVSGLMRTFSIGEPSDRLRRVHEAEVAGLESALAAVKLGVTCGD
CCCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
IATAFNKTLRRHGFDKETRCGYAIGIDWLEPTASLKENDETVLQTNMTFHLMLGNWIDED
HHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCEEEEEECCHHHHH
FGYVISETFRVTERGAETFSCLPREIFEI
HHHHHHHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure 
PIPKGLQAFPRAEYLRRLSAVKAEMGRRETNTLIVTTSADITYLSGYTCKSGYVPQGLI
CCCCCCHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCEE
ISLAEEEPTFVARRCDAPAAMHQMFIDSGRVIGYPEALIANPRADGFDAMIDFLRQNGLA
EEECCCCCCHHHHHCCCHHHHHHHHHHCCCEECCCHHHHCCCCCCCHHHHHHHHHHCCCC
KGRIGLETKSLRSETVEKFKARMSAVAIVDFSNTIAWIRLAKSDLEIAVMREAAAITDAG
CCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEEECCCCEEEEHHHHHHHHHHH
MLRAKEVIRPGVREADAAAEIISTLIRGADGKPGTDLAGFYLCASPRSATAHVHWSEDVF
HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEEEECHHHH
RDGSQINLEFGGVRHGYVSGLMRTFSIGEPSDRLRRVHEAEVAGLESALAAVKLGVTCGD
CCCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
IATAFNKTLRRHGFDKETRCGYAIGIDWLEPTASLKENDETVLQTNMTFHLMLGNWIDED
HHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCEEEEEECCHHHHH
FGYVISETFRVTERGAETFSCLPREIFEI
HHHHHHHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]