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The map label for this gene is xerC [C]

Identifier: 13474971

GI number: 13474971

Start: 4816903

End: 4818126

Strand: Reverse

Name: xerC [C]

Synonym: mll5958

Alternate gene names: 13474971

Gene position: 4818126-4816903 (Counterclockwise)

Preceding gene: 13474972

Following gene: 13474968

Centisome position: 68.48

GC content: 62.34

Gene sequence:

>1224_bases
ATGATTGATCTGAATGAGGCGCTAGCCAAAGATCGCTGGATAGGCCGATTGGCTAGCCACCTGGATGGTTTCGAGGCTTT
GCTCGATGGCCAGGGATACGCCAAAACGACTGTTCAGCAGAAGATTAAGCTCCTGGCCGGTTTCAGTGCTTGGGTGGAGA
GGCAGGATGTTCCGCTGAGCTTGCTCGGGGAAGAGGACGCAGATCTATTTCTGACGGAACTTGGTCTGCGCCCGAGGCGT
GGCGATGCTTGGACCATTCGGCAGTTGGTACGATATCTGCGCGACACGGGCGGCGTGCCGGTGCTGCTGCCAGAGGTCGA
TACGAGCGCCAAGGGTAAGCTGATCGACGCATTTGGGGAATTCCTGCGCAAGGAGCGTGGTCTCTCGGCATCGACATTGA
CGAATTATCTGCCGATTATTCGTGGGTTCCTGGACGAACAGTTTGGCGGCAAGGATCCGGGTTTCGACCACCTGCGAGTG
GGCGACGTTCATCGGTTCATCGTGCGGCGAGCCCAGGCCGGGTCGCTCGGCCGCGCCAAGTTGGCGGTCACGGCGCTGCG
TTCGTTTCTGCGCTTCCTGCAGCAACGCGGTTTGCTTGCGACCGATCTCGCTGTCGCGGTGCCTGGGATCGCCGGCTGGC
GCTTGGCACACTTGCCGAAGGCGCTGCGTGCAGAACAGGTCGAACGGCTCCTTGCGTCTTGCGACAGGAGAACACCGGCC
GGCCGCAGGGACTACGCGGTTCTGATGCTGCTCGCGCGCCTCGGCTTACGGGGTGGCGAAGTCTCGGCCCTGACCCTGGA
CGATCTCGACTGGGATTGCGGCGAGATCGTCGTGCATGGCAAGGGTCAACGGCTGGCGCGGCTGCCACTGCCGGCGGATG
TCGGTGCCGCCTTGGTCGACTATCTGCGGCAGGATCGGCCTGCTTGCTCAACACGCCGTGTCTTCATTCGCACGCGGGCT
CCCAGACGCGGCTTTGTCAGCCAGTCGACTATTTGCTGCATCGTCCGTCGTGCGCTCAAGCGCGCCGGTCTGACGCCGGC
GTTCAAGGGTGCGCACCTGTTGCGTCACTCACTCGCCACCGATCTGCTGCGCCGCGGCGCCTCGCTCGTTGAAATCGGTC
AACTTCTCCGCCACAGCCAGCCGAACACGACACAGATCTATGCCAAAGTCGACATCGCGGCGTTGCGTGCCATTGCGCTA
CCCTGGCCAGGAGTCGCATCATGA

Upstream 100 bases:

>100_bases
ATTGCAAGTAATTGGATCAGCGTCGGCCGTTGATTGCTCGACATTATTCGGCTGCTCTTTCTGAGCGTGGACTTTCCCAC
GCTATAGGGAGAGACAGACG

Downstream 100 bases:

>100_bases
GCGCGTTGCAAGCGGCGCTCGAAGAGTACCTGGCCGCGCGCCGCGCCCTCGCCCATAAGCTGCGTCTTTCCGGACGGTTG
CTGCAGCGCTTCGTTGTCTT

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MIDLNEALAKDRWIGRLASHLDGFEALLDGQGYAKTTVQQKIKLLAGFSAWVERQDVPLSLLGEEDADLFLTELGLRPRR
GDAWTIRQLVRYLRDTGGVPVLLPEVDTSAKGKLIDAFGEFLRKERGLSASTLTNYLPIIRGFLDEQFGGKDPGFDHLRV
GDVHRFIVRRAQAGSLGRAKLAVTALRSFLRFLQQRGLLATDLAVAVPGIAGWRLAHLPKALRAEQVERLLASCDRRTPA
GRRDYAVLMLLARLGLRGGEVSALTLDDLDWDCGEIVVHGKGQRLARLPLPADVGAALVDYLRQDRPACSTRRVFIRTRA
PRRGFVSQSTICCIVRRALKRAGLTPAFKGAHLLRHSLATDLLRRGASLVEIGQLLRHSQPNTTQIYAKVDIAALRAIAL
PWPGVAS

Sequences:

>Translated_407_residues
MIDLNEALAKDRWIGRLASHLDGFEALLDGQGYAKTTVQQKIKLLAGFSAWVERQDVPLSLLGEEDADLFLTELGLRPRR
GDAWTIRQLVRYLRDTGGVPVLLPEVDTSAKGKLIDAFGEFLRKERGLSASTLTNYLPIIRGFLDEQFGGKDPGFDHLRV
GDVHRFIVRRAQAGSLGRAKLAVTALRSFLRFLQQRGLLATDLAVAVPGIAGWRLAHLPKALRAEQVERLLASCDRRTPA
GRRDYAVLMLLARLGLRGGEVSALTLDDLDWDCGEIVVHGKGQRLARLPLPADVGAALVDYLRQDRPACSTRRVFIRTRA
PRRGFVSQSTICCIVRRALKRAGLTPAFKGAHLLRHSLATDLLRRGASLVEIGQLLRHSQPNTTQIYAKVDIAALRAIAL
PWPGVAS
>Mature_407_residues
MIDLNEALAKDRWIGRLASHLDGFEALLDGQGYAKTTVQQKIKLLAGFSAWVERQDVPLSLLGEEDADLFLTELGLRPRR
GDAWTIRQLVRYLRDTGGVPVLLPEVDTSAKGKLIDAFGEFLRKERGLSASTLTNYLPIIRGFLDEQFGGKDPGFDHLRV
GDVHRFIVRRAQAGSLGRAKLAVTALRSFLRFLQQRGLLATDLAVAVPGIAGWRLAHLPKALRAEQVERLLASCDRRTPA
GRRDYAVLMLLARLGLRGGEVSALTLDDLDWDCGEIVVHGKGQRLARLPLPADVGAALVDYLRQDRPACSTRRVFIRTRA
PRRGFVSQSTICCIVRRALKRAGLTPAFKGAHLLRHSLATDLLRRGASLVEIGQLLRHSQPNTTQIYAKVDIAALRAIAL
PWPGVAS

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=287, Percent_Identity=29.9651567944251, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789261, Length=292, Percent_Identity=29.1095890410959, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44870; Mature: 44870

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDLNEALAKDRWIGRLASHLDGFEALLDGQGYAKTTVQQKIKLLAGFSAWVERQDVPLS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
LLGEEDADLFLTELGLRPRRGDAWTIRQLVRYLRDTGGVPVLLPEVDTSAKGKLIDAFGE
ECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHH
FLRKERGLSASTLTNYLPIIRGFLDEQFGGKDPGFDHLRVGDVHRFIVRRAQAGSLGRAK
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHH
LAVTALRSFLRFLQQRGLLATDLAVAVPGIAGWRLAHLPKALRAEQVERLLASCDRRTPA
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GRRDYAVLMLLARLGLRGGEVSALTLDDLDWDCGEIVVHGKGQRLARLPLPADVGAALVD
CCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEECCCCEEEECCCCHHHHHHHHH
YLRQDRPACSTRRVFIRTRAPRRGFVSQSTICCIVRRALKRAGLTPAFKGAHLLRHSLAT
HHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
DLLRRGASLVEIGQLLRHSQPNTTQIYAKVDIAALRAIALPWPGVAS
HHHHCCCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIDLNEALAKDRWIGRLASHLDGFEALLDGQGYAKTTVQQKIKLLAGFSAWVERQDVPLS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
LLGEEDADLFLTELGLRPRRGDAWTIRQLVRYLRDTGGVPVLLPEVDTSAKGKLIDAFGE
ECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHH
FLRKERGLSASTLTNYLPIIRGFLDEQFGGKDPGFDHLRVGDVHRFIVRRAQAGSLGRAK
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHH
LAVTALRSFLRFLQQRGLLATDLAVAVPGIAGWRLAHLPKALRAEQVERLLASCDRRTPA
HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GRRDYAVLMLLARLGLRGGEVSALTLDDLDWDCGEIVVHGKGQRLARLPLPADVGAALVD
CCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEECCCCEEEECCCCHHHHHHHHH
YLRQDRPACSTRRVFIRTRAPRRGFVSQSTICCIVRRALKRAGLTPAFKGAHLLRHSLAT
HHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
DLLRRGASLVEIGQLLRHSQPNTTQIYAKVDIAALRAIALPWPGVAS
HHHHCCCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]