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The map label for this gene is rbsC [C]

Identifier: 13474801

GI number: 13474801

Start: 4649704

End: 4650708

Strand: Reverse

Name: rbsC [C]

Synonym: mll5769

Alternate gene names: 13474801

Gene position: 4650708-4649704 (Counterclockwise)

Preceding gene: 13474802

Following gene: 13474800

Centisome position: 66.1

GC content: 63.38

Gene sequence:

>1005_bases
ATGACCGACGCGACCAACGGCAACACGACCACCAGCAAACTCCGGAGCGCCACGTCACGCGTCCCAGCAGTTCTTTTGTC
CTACCGCACGGAAGCCGCGATTGCAGCGGCAATCGTGGTCCTGCTGCTGGCCGTTGGCATGTTCGTGCCCGCCGCACTCA
GCATGGGTAATTTGCAAAACATCGTCCAGGCCGCCGCGCCTCTCATCATCATGTCGCTCGGTGTTTTGCTGGTCGTGGTC
ACCGGCGGCATCGATCTTTCGGTCGGTTCAGTCTTTTCCCTGACCGGGATGGTGACCGCGCTGGCGATGGCCAATGGCGC
TGACGGACTGACCGCCAGCGCCGCCGGCCTGGCGGTCGGCTTGGGGTTCGGCGCGATCAATGGTCTTCTGGTCACAGTCG
TCGGGCTCGCGCCTTTCGTCGTCACGCTCATCACCTACGCGGTGGCGGGCAGCCTGGCCTTCATCGTCACCAACGGCCGT
TCGATGCCGATCGGCGCACCGGATTTCTGGCTCCTGAATTCCGGCGAGATCGTCCCCGGCATGCCCAACCATCTCGTGGT
CTGCATCGTACTGATGGTCGCGCTGGAATATGTGCTGCGCAAGGTCGTGGTCGGACGCTGGTTCTATGCCGTCGGCTCGT
CGGCAATTGCGGCCCGGCTGCTTGGCATCCCGGTTCTGCGCATCAAGTTCGCGGCCTATGTCGCTTCGGGCCTGCTTGCC
TCTTTGGCGGGGCTGCTGACGGTCAGCTACATCCTCAACGCCGAAGCCACGGCAGGGGCGAGCCTGATGCTGCAGGCGAT
TGCCGCTGTGGTCATTGGCGGGGCCAGCCTTTTTGGCGGAACCGGCAGCGCGATCGGCGCCGTGCTGGGCGCGCTGATGA
TCACCTGCATCCAGAACGGTGTGAACCTCATTGGCGTGAACAGCTTCTGGCAAGGCTCCGTCACAGGCGCCGCAATCCTG
CTCGCGGTTTTGATCGACCGCTTCAGCAACAAGAACCGCATCTAG

Upstream 100 bases:

>100_bases
ATGCCATTTTCGCCTTCGACACCAATGGGCAGCCAAAGGGATTCCTGCCCGAGGAGCACTACACCGAAGACGGGCTCGCC
GAACTGACGGGGATGGCGGC

Downstream 100 bases:

>100_bases
ATCATCAACGGGAGGAACCAAGATGAAGTTGAAGAGCATCCTGATTGCAGCTTTGGCGACGGCCGCCTTGTCAAGCGCGT
CGTACGCCGAAGACAAGAAG

Product: ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MTDATNGNTTTSKLRSATSRVPAVLLSYRTEAAIAAAIVVLLLAVGMFVPAALSMGNLQNIVQAAAPLIIMSLGVLLVVV
TGGIDLSVGSVFSLTGMVTALAMANGADGLTASAAGLAVGLGFGAINGLLVTVVGLAPFVVTLITYAVAGSLAFIVTNGR
SMPIGAPDFWLLNSGEIVPGMPNHLVVCIVLMVALEYVLRKVVVGRWFYAVGSSAIAARLLGIPVLRIKFAAYVASGLLA
SLAGLLTVSYILNAEATAGASLMLQAIAAVVIGGASLFGGTGSAIGAVLGALMITCIQNGVNLIGVNSFWQGSVTGAAIL
LAVLIDRFSNKNRI

Sequences:

>Translated_334_residues
MTDATNGNTTTSKLRSATSRVPAVLLSYRTEAAIAAAIVVLLLAVGMFVPAALSMGNLQNIVQAAAPLIIMSLGVLLVVV
TGGIDLSVGSVFSLTGMVTALAMANGADGLTASAAGLAVGLGFGAINGLLVTVVGLAPFVVTLITYAVAGSLAFIVTNGR
SMPIGAPDFWLLNSGEIVPGMPNHLVVCIVLMVALEYVLRKVVVGRWFYAVGSSAIAARLLGIPVLRIKFAAYVASGLLA
SLAGLLTVSYILNAEATAGASLMLQAIAAVVIGGASLFGGTGSAIGAVLGALMITCIQNGVNLIGVNSFWQGSVTGAAIL
LAVLIDRFSNKNRI
>Mature_333_residues
TDATNGNTTTSKLRSATSRVPAVLLSYRTEAAIAAAIVVLLLAVGMFVPAALSMGNLQNIVQAAAPLIIMSLGVLLVVVT
GGIDLSVGSVFSLTGMVTALAMANGADGLTASAAGLAVGLGFGAINGLLVTVVGLAPFVVTLITYAVAGSLAFIVTNGRS
MPIGAPDFWLLNSGEIVPGMPNHLVVCIVLMVALEYVLRKVVVGRWFYAVGSSAIAARLLGIPVLRIKFAAYVASGLLAS
LAGLLTVSYILNAEATAGASLMLQAIAAVVIGGASLFGGTGSAIGAVLGALMITCIQNGVNLIGVNSFWQGSVTGAAILL
AVLIDRFSNKNRI

Specific function: Probably part of the binding-protein-dependent transport system y4mIJK. This system probably transports a sugar. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=301, Percent_Identity=38.8704318936877, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI1788896, Length=299, Percent_Identity=33.4448160535117, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1790524, Length=324, Percent_Identity=30.8641975308642, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI145693152, Length=294, Percent_Identity=30.2721088435374, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI145693214, Length=247, Percent_Identity=35.2226720647773, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI87082395, Length=306, Percent_Identity=30.718954248366, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1787794, Length=318, Percent_Identity=31.1320754716981, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1789992, Length=136, Percent_Identity=41.9117647058824, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1787793, Length=281, Percent_Identity=33.0960854092527, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788471, Length=331, Percent_Identity=31.7220543806647, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33642; Mature: 33510

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDATNGNTTTSKLRSATSRVPAVLLSYRTEAAIAAAIVVLLLAVGMFVPAALSMGNLQN
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVQAAAPLIIMSLGVLLVVVTGGIDLSVGSVFSLTGMVTALAMANGADGLTASAAGLAVG
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LGFGAINGLLVTVVGLAPFVVTLITYAVAGSLAFIVTNGRSMPIGAPDFWLLNSGEIVPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEECCCCCCCC
MPNHLVVCIVLMVALEYVLRKVVVGRWFYAVGSSAIAARLLGIPVLRIKFAAYVASGLLA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
SLAGLLTVSYILNAEATAGASLMLQAIAAVVIGGASLFGGTGSAIGAVLGALMITCIQNG
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHCC
VNLIGVNSFWQGSVTGAAILLAVLIDRFSNKNRI
CCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TDATNGNTTTSKLRSATSRVPAVLLSYRTEAAIAAAIVVLLLAVGMFVPAALSMGNLQN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVQAAAPLIIMSLGVLLVVVTGGIDLSVGSVFSLTGMVTALAMANGADGLTASAAGLAVG
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LGFGAINGLLVTVVGLAPFVVTLITYAVAGSLAFIVTNGRSMPIGAPDFWLLNSGEIVPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEECCCCCCCC
MPNHLVVCIVLMVALEYVLRKVVVGRWFYAVGSSAIAARLLGIPVLRIKFAAYVASGLLA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
SLAGLLTVSYILNAEATAGASLMLQAIAAVVIGGASLFGGTGSAIGAVLGALMITCIQNG
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHCC
VNLIGVNSFWQGSVTGAAILLAVLIDRFSNKNRI
CCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]