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The map label for this gene is rbsC [H]

Identifier: 13474747

GI number: 13474747

Start: 4590800

End: 4591777

Strand: Reverse

Name: rbsC [H]

Synonym: mll5704

Alternate gene names: 13474747

Gene position: 4591777-4590800 (Counterclockwise)

Preceding gene: 13474748

Following gene: 13474746

Centisome position: 65.26

GC content: 63.09

Gene sequence:

>978_bases
ATGAAGGCCTTTCTCAAATACCGCGAGATCTGGCTGGCCGCGGCTATCATCGTGCTGATCGGGCTGATCTCGACCCGCTT
CCCGGCTTTTGCCGACCCCGGCAACCTGGGCCAGGTGTTCAACGACACCTCGATCCTGATGATCCTGGCGCTCGGCCAGA
TGGTGGTGATCCTGACGCGGTCGATCGACCTGTCGATGGCCTCTAATCTCTGCTTCACCGGTATGGTGGTGGCGATGCTG
AACGCGGCACACCCGGCGATCCCGATCCCGGTGTTGATCGTCATCGCGCTCGCTGTCGGGCTTGCGCTGGGCGCCATCAA
CGGCCTTCTGGTGTGGCGGCTGAACATTCCTTCGATCGTGGTGACTTTGGGCACGCTGACCATCTATCGCGGCGCCACTT
TCGTCCTGTCCGGCGGCGCCTGGGTCAATGCCGACAAGATGAGCCCGGAGTTCATCGGCTTCCAGCGCGCCGCCTTCCTC
GGCATTCCGGTGCTGTCCTGGATTGCCATCCTGGTCATCGCGCTGTTCTTCGTGCTGATGACGCGCACCGCGCTCGGCCG
CTCGATCTATGCCATCGGCGTCAACCCGACCGCGTCAATCTATACCGGCATCGATGTCGGCCGCACGAAATTCATCGTCT
TCTGCATCTCCGGCATGATCGGCGGGCTTGCCGGCTATCTCTGGATCTCGCGTTACGTCATCGCCTCGGTCGAAGTCGCC
AACGGCTATGAGCTCAACATCATCGCCGCCTGCGTCATCGGCGGCATTTCGATCGCCGGCGGCATCGGCTCGGTCGGCGG
CGCGGTGCTGGGCGCGCTGTTCCTCGGCATCATCTCCAACGCGCTCCCGGTCATCAACATCTCGCCCTTCTGGCAGATGG
CGATTTCGGGTAGCGCCATCATCCTGGCCGTCGTGCTCAACGCGCGCGGCGAACGCCAGCAGGGTCGCATCATCCTGAGA
AAGGCGGAGGCGGCATGA

Upstream 100 bases:

>100_bases
ACCGGGTGGTGGTTATGCGCGAAGGCCTTGTCGCGGCGACATATGACAATAAGGGGCTGGACGCCGAGACGTTGGTGCGG
ACGGCAGCGGGGATCGCGGC

Downstream 100 bases:

>100_bases
GCGATATCCCTGCCCCGCGCCACATTCCCGACCGGCTCGACAAGCCGTTTCGCTCGGCGATCTTTTCCTGGGAGGCGCTG
CTGGTCGTGGTGGCCGTTGC

Product: sugar ABC transporter permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MKAFLKYREIWLAAAIIVLIGLISTRFPAFADPGNLGQVFNDTSILMILALGQMVVILTRSIDLSMASNLCFTGMVVAML
NAAHPAIPIPVLIVIALAVGLALGAINGLLVWRLNIPSIVVTLGTLTIYRGATFVLSGGAWVNADKMSPEFIGFQRAAFL
GIPVLSWIAILVIALFFVLMTRTALGRSIYAIGVNPTASIYTGIDVGRTKFIVFCISGMIGGLAGYLWISRYVIASVEVA
NGYELNIIAACVIGGISIAGGIGSVGGAVLGALFLGIISNALPVINISPFWQMAISGSAIILAVVLNARGERQQGRIILR
KAEAA

Sequences:

>Translated_325_residues
MKAFLKYREIWLAAAIIVLIGLISTRFPAFADPGNLGQVFNDTSILMILALGQMVVILTRSIDLSMASNLCFTGMVVAML
NAAHPAIPIPVLIVIALAVGLALGAINGLLVWRLNIPSIVVTLGTLTIYRGATFVLSGGAWVNADKMSPEFIGFQRAAFL
GIPVLSWIAILVIALFFVLMTRTALGRSIYAIGVNPTASIYTGIDVGRTKFIVFCISGMIGGLAGYLWISRYVIASVEVA
NGYELNIIAACVIGGISIAGGIGSVGGAVLGALFLGIISNALPVINISPFWQMAISGSAIILAVVLNARGERQQGRIILR
KAEAA
>Mature_325_residues
MKAFLKYREIWLAAAIIVLIGLISTRFPAFADPGNLGQVFNDTSILMILALGQMVVILTRSIDLSMASNLCFTGMVVAML
NAAHPAIPIPVLIVIALAVGLALGAINGLLVWRLNIPSIVVTLGTLTIYRGATFVLSGGAWVNADKMSPEFIGFQRAAFL
GIPVLSWIAILVIALFFVLMTRTALGRSIYAIGVNPTASIYTGIDVGRTKFIVFCISGMIGGLAGYLWISRYVIASVEVA
NGYELNIIAACVIGGISIAGGIGSVGGAVLGALFLGIISNALPVINISPFWQMAISGSAIILAVVLNARGERQQGRIILR
KAEAA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=299, Percent_Identity=36.1204013377926, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1790524, Length=302, Percent_Identity=36.0927152317881, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1788896, Length=309, Percent_Identity=32.3624595469256, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI145693152, Length=321, Percent_Identity=31.1526479750779, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1787793, Length=306, Percent_Identity=34.9673202614379, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1789992, Length=364, Percent_Identity=31.043956043956, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1788471, Length=332, Percent_Identity=33.433734939759, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082395, Length=312, Percent_Identity=29.8076923076923, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1787794, Length=311, Percent_Identity=27.6527331189711, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI145693214, Length=239, Percent_Identity=30.9623430962343, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34161; Mature: 34161

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAFLKYREIWLAAAIIVLIGLISTRFPAFADPGNLGQVFNDTSILMILALGQMVVILTR
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHH
SIDLSMASNLCFTGMVVAMLNAAHPAIPIPVLIVIALAVGLALGAINGLLVWRLNIPSIV
CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHH
VTLGTLTIYRGATFVLSGGAWVNADKMSPEFIGFQRAAFLGIPVLSWIAILVIALFFVLM
HHHHHHHHCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRTALGRSIYAIGVNPTASIYTGIDVGRTKFIVFCISGMIGGLAGYLWISRYVIASVEVA
HHHHHCCEEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
NGYELNIIAACVIGGISIAGGIGSVGGAVLGALFLGIISNALPVINISPFWQMAISGSAI
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHCCCCE
ILAVVLNARGERQQGRIILRKAEAA
EEEEECCCCCCCCCCCEEEEECCCC
>Mature Secondary Structure
MKAFLKYREIWLAAAIIVLIGLISTRFPAFADPGNLGQVFNDTSILMILALGQMVVILTR
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHH
SIDLSMASNLCFTGMVVAMLNAAHPAIPIPVLIVIALAVGLALGAINGLLVWRLNIPSIV
CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHH
VTLGTLTIYRGATFVLSGGAWVNADKMSPEFIGFQRAAFLGIPVLSWIAILVIALFFVLM
HHHHHHHHCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRTALGRSIYAIGVNPTASIYTGIDVGRTKFIVFCISGMIGGLAGYLWISRYVIASVEVA
HHHHHCCEEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
NGYELNIIAACVIGGISIAGGIGSVGGAVLGALFLGIISNALPVINISPFWQMAISGSAI
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHCCCCE
ILAVVLNARGERQQGRIILRKAEAA
EEEEECCCCCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]