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The map label for this gene is rbsC [H]

Identifier: 13474746

GI number: 13474746

Start: 4589808

End: 4590803

Strand: Reverse

Name: rbsC [H]

Synonym: mll5703

Alternate gene names: 13474746

Gene position: 4590803-4589808 (Counterclockwise)

Preceding gene: 13474747

Following gene: 13474745

Centisome position: 65.25

GC content: 62.95

Gene sequence:

>996_bases
ATGAGCGATATCCCTGCCCCGCGCCACATTCCCGACCGGCTCGACAAGCCGTTTCGCTCGGCGATCTTTTCCTGGGAGGC
GCTGCTGGTCGTGGTGGCCGTTGCCATCTTCGCCATCAACAGCTTCGCCTCGCCCTATTTCCTCGACCCCTATTCGCTGT
CGGATCTGACCTTCAATTTCACGGAGAAGGGCCTGATCGCCTTTGCCATGGCGCTGCTGATCATTTCGGGCGAGATCGAC
CTGTCGGTGGCCGCCATCATCGCACTGGCATCGACCATGATGGGCATGGCGGTGCAGGCGGGAGCCGGCACGCCGGTGCT
GGTGCTGATCGGCATCGTGGTGGGCCTCGGCTGCGGCGCCTTCAACGGGCTCTTGGTGACAAGGCTTGGCCTGCCGTCGA
TCGTCGTCACCATCGGCACGATGAGCCTGTTCCGCGGCATCGCCTTCATCATCCTTGGCGACCAGGCCTATAAGGGCTAT
CCCGAAAGCTTCGCCTTCTTCGGCCAGGGCTATGTCTGGTGGGTGGTCTCGTTCGAGCTGGTGCTCTTCCTCATCGCCGC
CGTCGTCTACTGGTTCCTGCTGCATCGCACGAGTTTCGGCCGCCGCGTCTTTGCCATCGGCAACAATCCGGTCGCTGCGC
AGTTTTCCGGCGTGCGCGTCGGCCGCATCAAATTCATCCTTTTCTGCCTGACCGGACTGATGTCAGGCATAGCTTCGGTG
CTGATCACCTCACGGCTCGGCTCGACGAGGCCGTCGATCGCGCAGGGCTATGAGCTGGAAGTCATCACCATGGTGGTGCT
CGGCGGCGTCAGCATTCTGGGCGGCGCCGGCAGCATTGTCGGCGTCGTGCTGGCAGCCTTCATCATGGGGCTGGTGACCT
TCGGCCTTGGCCTGCTCAACGTGCCGGGCATCGTCATGTCGATCTTCATCGGCCTGCTGCTGATCATCGTCATCGCCCTG
CCGATCGTCTGGCGGCGGCTGCGCGGAGGACGTTGA

Upstream 100 bases:

>100_bases
AGATGGCGATTTCGGGTAGCGCCATCATCCTGGCCGTCGTGCTCAACGCGCGCGGCGAACGCCAGCAGGGTCGCATCATC
CTGAGAAAGGCGGAGGCGGC

Downstream 100 bases:

>100_bases
TGCCTGAGAAATACGCGTTCAAGATGAAGCTCAAGCCGGGTATGAAGGCCGAGTACAAGAAGCGCCATGACGAGATCTGG
CCGTCGCTGGTCTCGCTCTT

Product: sugar ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MSDIPAPRHIPDRLDKPFRSAIFSWEALLVVVAVAIFAINSFASPYFLDPYSLSDLTFNFTEKGLIAFAMALLIISGEID
LSVAAIIALASTMMGMAVQAGAGTPVLVLIGIVVGLGCGAFNGLLVTRLGLPSIVVTIGTMSLFRGIAFIILGDQAYKGY
PESFAFFGQGYVWWVVSFELVLFLIAAVVYWFLLHRTSFGRRVFAIGNNPVAAQFSGVRVGRIKFILFCLTGLMSGIASV
LITSRLGSTRPSIAQGYELEVITMVVLGGVSILGGAGSIVGVVLAAFIMGLVTFGLGLLNVPGIVMSIFIGLLLIIVIAL
PIVWRRLRGGR

Sequences:

>Translated_331_residues
MSDIPAPRHIPDRLDKPFRSAIFSWEALLVVVAVAIFAINSFASPYFLDPYSLSDLTFNFTEKGLIAFAMALLIISGEID
LSVAAIIALASTMMGMAVQAGAGTPVLVLIGIVVGLGCGAFNGLLVTRLGLPSIVVTIGTMSLFRGIAFIILGDQAYKGY
PESFAFFGQGYVWWVVSFELVLFLIAAVVYWFLLHRTSFGRRVFAIGNNPVAAQFSGVRVGRIKFILFCLTGLMSGIASV
LITSRLGSTRPSIAQGYELEVITMVVLGGVSILGGAGSIVGVVLAAFIMGLVTFGLGLLNVPGIVMSIFIGLLLIIVIAL
PIVWRRLRGGR
>Mature_330_residues
SDIPAPRHIPDRLDKPFRSAIFSWEALLVVVAVAIFAINSFASPYFLDPYSLSDLTFNFTEKGLIAFAMALLIISGEIDL
SVAAIIALASTMMGMAVQAGAGTPVLVLIGIVVGLGCGAFNGLLVTRLGLPSIVVTIGTMSLFRGIAFIILGDQAYKGYP
ESFAFFGQGYVWWVVSFELVLFLIAAVVYWFLLHRTSFGRRVFAIGNNPVAAQFSGVRVGRIKFILFCLTGLMSGIASVL
ITSRLGSTRPSIAQGYELEVITMVVLGGVSILGGAGSIVGVVLAAFIMGLVTFGLGLLNVPGIVMSIFIGLLLIIVIALP
IVWRRLRGGR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787794, Length=306, Percent_Identity=36.2745098039216, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI145693152, Length=295, Percent_Identity=35.5932203389831, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1788896, Length=318, Percent_Identity=30.8176100628931, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1790191, Length=287, Percent_Identity=32.404181184669, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1790524, Length=314, Percent_Identity=32.484076433121, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1789992, Length=135, Percent_Identity=40, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787793, Length=282, Percent_Identity=32.6241134751773, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082395, Length=296, Percent_Identity=27.7027027027027, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788471, Length=255, Percent_Identity=30.5882352941176, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI145693214, Length=239, Percent_Identity=29.2887029288703, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35228; Mature: 35097

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDIPAPRHIPDRLDKPFRSAIFSWEALLVVVAVAIFAINSFASPYFLDPYSLSDLTFNF
CCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCEECC
TEKGLIAFAMALLIISGEIDLSVAAIIALASTMMGMAVQAGAGTPVLVLIGIVVGLGCGA
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCH
FNGLLVTRLGLPSIVVTIGTMSLFRGIAFIILGDQAYKGYPESFAFFGQGYVWWVVSFEL
HHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEECCHHHCCCCHHHHHHCCCHHHHHHHHHH
VLFLIAAVVYWFLLHRTSFGRRVFAIGNNPVAAQFSGVRVGRIKFILFCLTGLMSGIASV
HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCEEHHHHHHHHHHHHHHHHHHHHH
LITSRLGSTRPSIAQGYELEVITMVVLGGVSILGGAGSIVGVVLAAFIMGLVTFGLGLLN
HHHHHCCCCCCCHHCCCCHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
VPGIVMSIFIGLLLIIVIALPIVWRRLRGGR
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SDIPAPRHIPDRLDKPFRSAIFSWEALLVVVAVAIFAINSFASPYFLDPYSLSDLTFNF
CCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCEECC
TEKGLIAFAMALLIISGEIDLSVAAIIALASTMMGMAVQAGAGTPVLVLIGIVVGLGCGA
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCH
FNGLLVTRLGLPSIVVTIGTMSLFRGIAFIILGDQAYKGYPESFAFFGQGYVWWVVSFEL
HHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEECCHHHCCCCHHHHHHCCCHHHHHHHHHH
VLFLIAAVVYWFLLHRTSFGRRVFAIGNNPVAAQFSGVRVGRIKFILFCLTGLMSGIASV
HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCEEHHHHHHHHHHHHHHHHHHHHH
LITSRLGSTRPSIAQGYELEVITMVVLGGVSILGGAGSIVGVVLAAFIMGLVTFGLGLLN
HHHHHCCCCCCCHHCCCCHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
VPGIVMSIFIGLLLIIVIALPIVWRRLRGGR
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]