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The map label for this gene is xylH [H]

Identifier: 13474709

GI number: 13474709

Start: 4546828

End: 4548114

Strand: Reverse

Name: xylH [H]

Synonym: mll5656

Alternate gene names: 13474709

Gene position: 4548114-4546828 (Counterclockwise)

Preceding gene: 13474710

Following gene: 13474708

Centisome position: 64.64

GC content: 64.02

Gene sequence:

>1287_bases
ATGAGCACCGACAGCGCCCCCGCCCCGCAGGGCAACATCGCAGAGGACCAGCGTCCACGCATCGCCGTCTCGGCGCTGAC
GACGAACCTGCGCGAATACGGTCTCATCATCGCGCTGATCGTCATCATGCTGTTCTTCCAGTTCACCACGTCGGGAACGC
TGTTCAAGCCGGTCAACCTCAGCAATTTGGTGCAGCAGAACTCGTTCATCATCGTGATGGCGCTGGGCATGCTGCTGGTC
ATCGTTTCCGGCTATATCGACCTCAGCGTCGGATCGGTCGCCGGTTTCATCGGCGCGCTGGCGGCAAACATGATGGTCAT
CTGGCAGCTCGGACCGCTCAGCAATCCGCTGGTGGTTTCGATCGTCTGCCTGATCGTGGGCGGCCTGATCGGTGCGGCGC
AAGGCTATTGGATCGCCTACCACCGGATACCGAGCTTCATCGTGACATTGGCCGGCATGCTGATCTTCCGCGGCATCTGC
CAGGCGCTGCTGGGCGGCGGCTCTTCGGTGGGCCCCCTTCCGGACGGCTTCAAGGCGCTGAGCTCCGGCTTCATCCCGGA
CGTTATCGGCCCGCTGACGCTGATCCCGCCGACGGTGAACGCCGCCGGCAAGACCATCGTGGGCAGCGGCCTGACACTGC
ACATGACGACGATCGTGCTCGGTCTGATCGCCGTGGTGGCCTATGCCTATTTCGGGGTGAGGACACGACGCAAGCGCGAA
CGCCACGGCTATGAAGCCGAGCCCTTCCCCCTGTTCGTCATCAAAACGCTGGTCGCCAGCGCGCTGGCGCTGTTCCTGGT
CTATGAGTTCGCCAGCTACAGGGGCCTGCCGGTGGTGCTGCTCGTCATGGGCGTACTGATCTCGCTGTTCGTCTTCGTCA
CCAAGCGCATGACCATCGGCCGCCGCATCTACGCGATGGGCGGCAATCCCAAGGCGGCGCAGCTGTCGGGCATCAACACC
GAGCGGCTGACGCTGCTGGTGTTCATCAATATGGGCGTGCTGTCGGCGCTGGGCGGCCTCATCATCGCGGCGCGTCTCGG
CCAGGCCGTGCCGGCGGCCGGTCTGGGCTCAGAGCTCGACGTCATCGCCGCCGTCTTCATCGGCGGCGCCTCGGCGATGG
GCGGCGTCGGCCAAGTCATCGGCGCCGTGGTCGGCGGCTTCATCATGGGCGTGATGAACAACGGCATGTCGATCATGGGT
GTCAATGTCGACTGGCAGCAGGTGGTCAAAGGCCTGGTGCTGCTCGGCGCCGTGATCTTCGACGTCTACAACAAGAACAA
GGCCTGA

Upstream 100 bases:

>100_bases
ACGTCATGAACGAAGGCCGCATCGTCGGCGAAATGCCCGCGGCGGACGCAAGCCAGGAAAAAATAATGCGCGCCATCGTT
CGCGGAGAAGGAAAAGCAGC

Downstream 100 bases:

>100_bases
CAGCGGGCAATTCCAGGAAGAGCGCATCGCGGTTTTCCCACAGGAATTGCGCGGAAACAAAATACCGGGAGCGGGTCGAC
CACTCAAAGCTGATCCGCTC

Product: sugar ABC transporter, permease

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 427

Protein sequence:

>428_residues
MSTDSAPAPQGNIAEDQRPRIAVSALTTNLREYGLIIALIVIMLFFQFTTSGTLFKPVNLSNLVQQNSFIIVMALGMLLV
IVSGYIDLSVGSVAGFIGALAANMMVIWQLGPLSNPLVVSIVCLIVGGLIGAAQGYWIAYHRIPSFIVTLAGMLIFRGIC
QALLGGGSSVGPLPDGFKALSSGFIPDVIGPLTLIPPTVNAAGKTIVGSGLTLHMTTIVLGLIAVVAYAYFGVRTRRKRE
RHGYEAEPFPLFVIKTLVASALALFLVYEFASYRGLPVVLLVMGVLISLFVFVTKRMTIGRRIYAMGGNPKAAQLSGINT
ERLTLLVFINMGVLSALGGLIIAARLGQAVPAAGLGSELDVIAAVFIGGASAMGGVGQVIGAVVGGFIMGVMNNGMSIMG
VNVDWQQVVKGLVLLGAVIFDVYNKNKA

Sequences:

>Translated_428_residues
MSTDSAPAPQGNIAEDQRPRIAVSALTTNLREYGLIIALIVIMLFFQFTTSGTLFKPVNLSNLVQQNSFIIVMALGMLLV
IVSGYIDLSVGSVAGFIGALAANMMVIWQLGPLSNPLVVSIVCLIVGGLIGAAQGYWIAYHRIPSFIVTLAGMLIFRGIC
QALLGGGSSVGPLPDGFKALSSGFIPDVIGPLTLIPPTVNAAGKTIVGSGLTLHMTTIVLGLIAVVAYAYFGVRTRRKRE
RHGYEAEPFPLFVIKTLVASALALFLVYEFASYRGLPVVLLVMGVLISLFVFVTKRMTIGRRIYAMGGNPKAAQLSGINT
ERLTLLVFINMGVLSALGGLIIAARLGQAVPAAGLGSELDVIAAVFIGGASAMGGVGQVIGAVVGGFIMGVMNNGMSIMG
VNVDWQQVVKGLVLLGAVIFDVYNKNKA
>Mature_427_residues
STDSAPAPQGNIAEDQRPRIAVSALTTNLREYGLIIALIVIMLFFQFTTSGTLFKPVNLSNLVQQNSFIIVMALGMLLVI
VSGYIDLSVGSVAGFIGALAANMMVIWQLGPLSNPLVVSIVCLIVGGLIGAAQGYWIAYHRIPSFIVTLAGMLIFRGICQ
ALLGGGSSVGPLPDGFKALSSGFIPDVIGPLTLIPPTVNAAGKTIVGSGLTLHMTTIVLGLIAVVAYAYFGVRTRRKRER
HGYEAEPFPLFVIKTLVASALALFLVYEFASYRGLPVVLLVMGVLISLFVFVTKRMTIGRRIYAMGGNPKAAQLSGINTE
RLTLLVFINMGVLSALGGLIIAARLGQAVPAAGLGSELDVIAAVFIGGASAMGGVGQVIGAVVGGFIMGVMNNGMSIMGV
NVDWQQVVKGLVLLGAVIFDVYNKNKA

Specific function: Part of the binding-protein-dependent transport system for D-xylose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4214

COG function: function code G; ABC-type xylose transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789992, Length=400, Percent_Identity=40.75, Blast_Score=236, Evalue=3e-63,
Organism=Escherichia coli, GI1790191, Length=153, Percent_Identity=41.8300653594771, Blast_Score=121, Evalue=8e-29,
Organism=Escherichia coli, GI1788896, Length=157, Percent_Identity=40.1273885350318, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1790524, Length=157, Percent_Identity=42.0382165605096, Blast_Score=111, Evalue=9e-26,
Organism=Escherichia coli, GI145693152, Length=164, Percent_Identity=37.1951219512195, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1788471, Length=133, Percent_Identity=44.3609022556391, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082395, Length=136, Percent_Identity=32.3529411764706, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1787793, Length=137, Percent_Identity=31.3868613138686, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 44844; Mature: 44713

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCCCCC
>Mature Secondary Structure 
STDSAPAPQGNIAEDQRPRIAVSALTTNLREYGLIIALIVIMLFFQFTTSGTLFKPVNL
CCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCH
SNLVQQNSFIIVMALGMLLVIVSGYIDLSVGSVAGFIGALAANMMVIWQLGPLSNPLVVS
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHH
IVCLIVGGLIGAAQGYWIAYHRIPSFIVTLAGMLIFRGICQALLGGGSSVGPLPDGFKAL
HHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
SSGFIPDVIGPLTLIPPTVNAAGKTIVGSGLTLHMTTIVLGLIAVVAYAYFGVRTRRKRE
HCCCCCHHHCCCEECCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RHGYEAEPFPLFVIKTLVASALALFLVYEFASYRGLPVVLLVMGVLISLFVFVTKRMTIG
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
RRIYAMGGNPKAAQLSGINTERLTLLVFINMGVLSALGGLIIAARLGQAVPAAGLGSELD
CEEEEECCCCCCCEECCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
VIAAVFIGGASAMGGVGQVIGAVVGGFIMGVMNNGMSIMGVNVDWQQVVKGLVLLGAVIF
HHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHH
DVYNKNKA
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]