Click here to switch to the map view.

The map label for this gene is rbfA

Identifier: 13474630

GI number: 13474630

Start: 4459579

End: 4460019

Strand: Direct

Name: rbfA

Synonym: mlr5557

Alternate gene names: 13474630

Gene position: 4459579-4460019 (Clockwise)

Preceding gene: 13474629

Following gene: 13474631

Centisome position: 63.38

GC content: 59.64

Gene sequence:

>441_bases
ATGCCCCGTCCAACCACATCCAGCCCGTCCCAGCGTATGCTGCGCGTTGCCGAACAGGTGCGCCACGCGCTCTCCGAAAC
CTTGCAGCGTGGTGAGATCATCGATCCGCTGATCGAAAATACCGTTGTGTCGGTCTCGGAAGTGCGCATGTCGCCCGACC
TGAGGGTCGCCACCGCTTTCGTTTCGCCGCTTGGCGCCAAGGACACCGACGCAGTTGTCGAGGCGTTGAACAAGCATGCG
AAATTCGTCCGCGGTCGTGTCTCCGGCGCTCTGCGGCAGATGAAGTTCATGCCGGAGTTCCGCTTCAAGCTCGACACCTC
TTTCGACAATTTCGCCAGGATCAACGATCTGCTGAAGTCGCCCGAAGTGGCACGCGATCTCGATGCGGACGACGACAAGA
CCAAGGACGACAGGGCCAAAGACGACAAGGACAGCGAATAA

Upstream 100 bases:

>100_bases
TGCGTTTCGAAACCGAATTCGATTTCGGGCCGATGCGTTGACATATGAGACATGCGGCACGGTCCCATCCCGTGCCTCAC
GCTTTCAGGATTGAGAAAAA

Downstream 100 bases:

>100_bases
TGGGGCGCCGCGGCAAGAAGAAGGGCCGGCCGGTCTCCGGCTGGGTGGTGCTGGACAAGCCGGTGGGGATGGGTTCCACC
GAGGCCGTGTCCAAGATCAA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MPRPTTSSPSQRMLRVAEQVRHALSETLQRGEIIDPLIENTVVSVSEVRMSPDLRVATAFVSPLGAKDTDAVVEALNKHA
KFVRGRVSGALRQMKFMPEFRFKLDTSFDNFARINDLLKSPEVARDLDADDDKTKDDRAKDDKDSE

Sequences:

>Translated_146_residues
MPRPTTSSPSQRMLRVAEQVRHALSETLQRGEIIDPLIENTVVSVSEVRMSPDLRVATAFVSPLGAKDTDAVVEALNKHA
KFVRGRVSGALRQMKFMPEFRFKLDTSFDNFARINDLLKSPEVARDLDADDDKTKDDRAKDDKDSE
>Mature_145_residues
PRPTTSSPSQRMLRVAEQVRHALSETLQRGEIIDPLIENTVVSVSEVRMSPDLRVATAFVSPLGAKDTDAVVEALNKHAK
FVRGRVSGALRQMKFMPEFRFKLDTSFDNFARINDLLKSPEVARDLDADDDKTKDDRAKDDKDSE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_RHILO (Q98BI7)

Other databases:

- EMBL:   BA000012
- RefSeq:   NP_106199.1
- ProteinModelPortal:   Q98BI7
- GeneID:   1228860
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mlr5557
- NMPDR:   fig|266835.1.peg.4303
- HOGENOM:   HBG751055
- OMA:   LRQMKYM
- ProtClustDB:   PRK00521
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 16417; Mature: 16286

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRPTTSSPSQRMLRVAEQVRHALSETLQRGEIIDPLIENTVVSVSEVRMSPDLRVATAF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
VSPLGAKDTDAVVEALNKHAKFVRGRVSGALRQMKFMPEFRFKLDTSFDNFARINDLLKS
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHC
PEVARDLDADDDKTKDDRAKDDKDSE
CHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PRPTTSSPSQRMLRVAEQVRHALSETLQRGEIIDPLIENTVVSVSEVRMSPDLRVATAF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
VSPLGAKDTDAVVEALNKHAKFVRGRVSGALRQMKFMPEFRFKLDTSFDNFARINDLLKS
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHC
PEVARDLDADDDKTKDDRAKDDKDSE
CHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968