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The map label for this gene is ydcV [H]

Identifier: 13474490

GI number: 13474490

Start: 4301491

End: 4302306

Strand: Direct

Name: ydcV [H]

Synonym: mlr5384

Alternate gene names: 13474490

Gene position: 4301491-4302306 (Clockwise)

Preceding gene: 13474489

Following gene: 13474491

Centisome position: 61.13

GC content: 64.22

Gene sequence:

>816_bases
ATGCGCTCTGACCGTGGTCAATCGGCTCCGCTCGGCCTGAAGATCGCCGCCGCCTGCGGCCTGCTCTTCCTGCATTTGCC
GATCCTGCTGATCTTCGTCTACGCCTTCACCACCGAGGAGAAGAGCTTCGTCTGGCCGCCGCCCGGGCTGACCACGCAAT
GGTTCGCCGTCACCTGGAACCGGCCTGACGTCTGGGAGGCGCTGTCGCTGTCGGTGCGCGTCGCCGCCATCTCGACGACG
ATTGCGCTGGTGCTCGGCACGCTGTGCGCCGCCGCGGTGTCACGGACGAAATTTTTCGGCCGCGAGACCATCTCGCTGCT
GGTCATCCTGCCCATCGCGCTGCCCGGTATCATCACCGGCATCGCGCTGCGCTCGGCCTTTTCGCTCGCCGACATCCCCT
TTTCGTTCTGGACGATCGTGCTCGGCCACGCCACTTTCTGCGTGGTCGTCGTCTACAACAATGCGGTCGCCCGTTTCCGC
CGCACATCCGGTTCGATGATCGAGGCCTCGATGGATCTCGGCGCCGATGGTTTTCAGACTTTCCGCCATGTCGTGCTGCC
CAACATCGCCACCGCGCTGCTTGCCGGCGGCATGCTGGCCTTCGCTTTGTCTTTCGACGAAGTCATCGTCACCACCTTCA
CCGCCGGCCAGCAGCAGACCGTGCCGATCTGGATGCTGGAGGAACTGATCCGCCCGCGCCAGCGCCCGGTCACCAATGTC
GTGGCCATGGTCGTCGTGCTGGTGACGCTGCTGCCCATCCTGTTTGCCTATTACCTCACCCGCGACGGCGACCAAATCGC
CGGTTCGGGCAAATAA

Upstream 100 bases:

>100_bases
GGCACCGCCGGCAACATCCCGCTCGCCGCCGCCTTCACCGTGGTGCCCATCGTCATCATGGGCTTCTACCTCTGGGGCGC
CAAGCGCATGGGGGCCTTCG

Downstream 100 bases:

>100_bases
CGTCAGTTCGTAAGGGAGAGACGTCCATGGACACCCAGATGCTGATCGGCTCGAAATTCGAGAACGGCGCCGAGACCGAG
GAGTCGATCCTCAATCCGAA

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MRSDRGQSAPLGLKIAAACGLLFLHLPILLIFVYAFTTEEKSFVWPPPGLTTQWFAVTWNRPDVWEALSLSVRVAAISTT
IALVLGTLCAAAVSRTKFFGRETISLLVILPIALPGIITGIALRSAFSLADIPFSFWTIVLGHATFCVVVVYNNAVARFR
RTSGSMIEASMDLGADGFQTFRHVVLPNIATALLAGGMLAFALSFDEVIVTTFTAGQQQTVPIWMLEELIRPRQRPVTNV
VAMVVVLVTLLPILFAYYLTRDGDQIAGSGK

Sequences:

>Translated_271_residues
MRSDRGQSAPLGLKIAAACGLLFLHLPILLIFVYAFTTEEKSFVWPPPGLTTQWFAVTWNRPDVWEALSLSVRVAAISTT
IALVLGTLCAAAVSRTKFFGRETISLLVILPIALPGIITGIALRSAFSLADIPFSFWTIVLGHATFCVVVVYNNAVARFR
RTSGSMIEASMDLGADGFQTFRHVVLPNIATALLAGGMLAFALSFDEVIVTTFTAGQQQTVPIWMLEELIRPRQRPVTNV
VAMVVVLVTLLPILFAYYLTRDGDQIAGSGK
>Mature_271_residues
MRSDRGQSAPLGLKIAAACGLLFLHLPILLIFVYAFTTEEKSFVWPPPGLTTQWFAVTWNRPDVWEALSLSVRVAAISTT
IALVLGTLCAAAVSRTKFFGRETISLLVILPIALPGIITGIALRSAFSLADIPFSFWTIVLGHATFCVVVVYNNAVARFR
RTSGSMIEASMDLGADGFQTFRHVVLPNIATALLAGGMLAFALSFDEVIVTTFTAGQQQTVPIWMLEELIRPRQRPVTNV
VAMVVVLVTLLPILFAYYLTRDGDQIAGSGK

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=265, Percent_Identity=63.3962264150943, Blast_Score=291, Evalue=5e-80,
Organism=Escherichia coli, GI1787368, Length=233, Percent_Identity=28.3261802575107, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1787081, Length=253, Percent_Identity=28.8537549407115, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787080, Length=220, Percent_Identity=28.6363636363636, Blast_Score=71, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29446; Mature: 29446

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSDRGQSAPLGLKIAAACGLLFLHLPILLIFVYAFTTEEKSFVWPPPGLTTQWFAVTWN
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCEEEEEECC
RPDVWEALSLSVRVAAISTTIALVLGTLCAAAVSRTKFFGRETISLLVILPIALPGIITG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IALRSAFSLADIPFSFWTIVLGHATFCVVVVYNNAVARFRRTSGSMIEASMDLGADGFQT
HHHHHHHHHHCCCHHHHHHHHHHHHEEEEEEECCHHHHHHHCCCCEEEEHHCCCCHHHHH
FRHVVLPNIATALLAGGMLAFALSFDEVIVTTFTAGQQQTVPIWMLEELIRPRQRPVTNV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHCCCCCCHHHH
VAMVVVLVTLLPILFAYYLTRDGDQIAGSGK
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRSDRGQSAPLGLKIAAACGLLFLHLPILLIFVYAFTTEEKSFVWPPPGLTTQWFAVTWN
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCEEEEEECC
RPDVWEALSLSVRVAAISTTIALVLGTLCAAAVSRTKFFGRETISLLVILPIALPGIITG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IALRSAFSLADIPFSFWTIVLGHATFCVVVVYNNAVARFRRTSGSMIEASMDLGADGFQT
HHHHHHHHHHCCCHHHHHHHHHHHHEEEEEEECCHHHHHHHCCCCEEEEHHCCCCHHHHH
FRHVVLPNIATALLAGGMLAFALSFDEVIVTTFTAGQQQTVPIWMLEELIRPRQRPVTNV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHCCCCCCHHHH
VAMVVVLVTLLPILFAYYLTRDGDQIAGSGK
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]