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The map label for this gene is ydcU [H]

Identifier: 13474489

GI number: 13474489

Start: 4300551

End: 4301501

Strand: Direct

Name: ydcU [H]

Synonym: mlr5383

Alternate gene names: 13474489

Gene position: 4300551-4301501 (Clockwise)

Preceding gene: 13474488

Following gene: 13474490

Centisome position: 61.12

GC content: 64.46

Gene sequence:

>951_bases
ATGCCGCGCGCCACGGCCCCCGCTATCCTGCCCGGCAGCGGCGGCATGCGCGGCGCGCTGTCGGACCTGTTCTGGCGTCG
GCCGCAACTGCTTCTGCTGCTCATGCTCTTGCCGCCGGTGCTGTGGCTCGGCATCGTCTATATCGGCTCGCTCTTCGCGC
TGCTGGCGCAGAGCTTTTTCTCCATCGACGAGTTCTCCGGCCTCATCAACCGCCAGTTCACGCTGAAGACCTATGGCGAC
CTGTTGCAGGCCGCCAATCTCGACATCATCCTGCGCACGGTCACCATGGCGGCCCTCGTCACCGTGGCCTCGGCCATCGT
CGCCTTTCCGATCGCCTACTACGCCGCGCGCTATGCGCGTGGCCGCTGGAAGGCGCTGTTCTATCTCGGCGTCATGCTGC
CACTGTGGTCGAGCTATCTGGTCAAGATCTATGCCTGGAAGCTGATCCTGGCCAAGGAAGGTATCCTCACCTGGCTCTTC
GGCAAACTGCATCTGCAATGGCTGCTCGATGCCTGGCTGTCGCTGCCGGTTGTCGGCGGCAACTCGCTGTCGGTGTCGTT
CACCGGCACCTTCATCGTCTTCGTCTATGTCTGGCTGCCCTTCATGATCTTGCCGGTACAGGCCGCCCTCGAGCGCGTGC
CCGGCAATCTGGTCGAAGCCTCCTCCGATCTCGGCGCTTCGCCGGGGCAGACCTTCCGCAACGTGCTGTTCCCGCTGGCC
CTGCCCGGCATTGTCGCCGGCTCGATCTTCACCTTCTCGCTGACATTGGGCGACTACATCATCCCGCAGATCATCGGCAC
GTCGCGCCTGTTCATCGGCCAGGCCGTCTATTCGCAGCAGGGCACCGCCGGCAACATCCCGCTCGCCGCCGCCTTCACCG
TGGTGCCCATCGTCATCATGGGCTTCTACCTCTGGGGCGCCAAGCGCATGGGGGCCTTCGATGCGCTCTGA

Upstream 100 bases:

>100_bases
CTGGCACGGTGCTGCCTGCCGAGGGCGAAGCGGTGGTGCTCACCTTCAACCGCGAGCACCTGCATCTGATGGATGAGCCG
GCATGAGCGTCGACGTCACC

Downstream 100 bases:

>100_bases
CCGTGGTCAATCGGCTCCGCTCGGCCTGAAGATCGCCGCCGCCTGCGGCCTGCTCTTCCTGCATTTGCCGATCCTGCTGA
TCTTCGTCTACGCCTTCACC

Product: ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MPRATAPAILPGSGGMRGALSDLFWRRPQLLLLLMLLPPVLWLGIVYIGSLFALLAQSFFSIDEFSGLINRQFTLKTYGD
LLQAANLDIILRTVTMAALVTVASAIVAFPIAYYAARYARGRWKALFYLGVMLPLWSSYLVKIYAWKLILAKEGILTWLF
GKLHLQWLLDAWLSLPVVGGNSLSVSFTGTFIVFVYVWLPFMILPVQAALERVPGNLVEASSDLGASPGQTFRNVLFPLA
LPGIVAGSIFTFSLTLGDYIIPQIIGTSRLFIGQAVYSQQGTAGNIPLAAAFTVVPIVIMGFYLWGAKRMGAFDAL

Sequences:

>Translated_316_residues
MPRATAPAILPGSGGMRGALSDLFWRRPQLLLLLMLLPPVLWLGIVYIGSLFALLAQSFFSIDEFSGLINRQFTLKTYGD
LLQAANLDIILRTVTMAALVTVASAIVAFPIAYYAARYARGRWKALFYLGVMLPLWSSYLVKIYAWKLILAKEGILTWLF
GKLHLQWLLDAWLSLPVVGGNSLSVSFTGTFIVFVYVWLPFMILPVQAALERVPGNLVEASSDLGASPGQTFRNVLFPLA
LPGIVAGSIFTFSLTLGDYIIPQIIGTSRLFIGQAVYSQQGTAGNIPLAAAFTVVPIVIMGFYLWGAKRMGAFDAL
>Mature_315_residues
PRATAPAILPGSGGMRGALSDLFWRRPQLLLLLMLLPPVLWLGIVYIGSLFALLAQSFFSIDEFSGLINRQFTLKTYGDL
LQAANLDIILRTVTMAALVTVASAIVAFPIAYYAARYARGRWKALFYLGVMLPLWSSYLVKIYAWKLILAKEGILTWLFG
KLHLQWLLDAWLSLPVVGGNSLSVSFTGTFIVFVYVWLPFMILPVQAALERVPGNLVEASSDLGASPGQTFRNVLFPLAL
PGIVAGSIFTFSLTLGDYIIPQIIGTSRLFIGQAVYSQQGTAGNIPLAAAFTVVPIVIMGFYLWGAKRMGAFDAL

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787713, Length=299, Percent_Identity=59.5317725752508, Blast_Score=338, Evalue=2e-94,
Organism=Escherichia coli, GI1787369, Length=263, Percent_Identity=28.8973384030418, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1787080, Length=246, Percent_Identity=31.3008130081301, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34547; Mature: 34415

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRATAPAILPGSGGMRGALSDLFWRRPQLLLLLMLLPPVLWLGIVYIGSLFALLAQSFF
CCCCCCCEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIDEFSGLINRQFTLKTYGDLLQAANLDIILRTVTMAALVTVASAIVAFPIAYYAARYAR
HHHHHHHHHCCCEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GRWKALFYLGVMLPLWSSYLVKIYAWKLILAKEGILTWLFGKLHLQWLLDAWLSLPVVGG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECC
NSLSVSFTGTFIVFVYVWLPFMILPVQAALERVPGNLVEASSDLGASPGQTFRNVLFPLA
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHH
LPGIVAGSIFTFSLTLGDYIIPQIIGTSRLFIGQAVYSQQGTAGNIPLAAAFTVVPIVIM
HHHHHHHHHHEEEHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
GFYLWGAKRMGAFDAL
HHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PRATAPAILPGSGGMRGALSDLFWRRPQLLLLLMLLPPVLWLGIVYIGSLFALLAQSFF
CCCCCCEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH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HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]