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The map label for this gene is ydcS [H]

Identifier: 13474487

GI number: 13474487

Start: 4298204

End: 4299361

Strand: Direct

Name: ydcS [H]

Synonym: mlr5381

Alternate gene names: 13474487

Gene position: 4298204-4299361 (Clockwise)

Preceding gene: 13474485

Following gene: 13474488

Centisome position: 61.09

GC content: 61.66

Gene sequence:

>1158_bases
ATGATGAATTCATTCCTGAAGTCATGCACGGCGCTGACGGTCGCGCTGACCTTCTCGGGTCAGGCCATCGCCCAGGTCAA
GGAACTCGGCAAGGGCGAGGGCCAGGTCAACATCGTTGCCTGGCCGGGCTACATCGAGCGCGGCGAGACCGACAAGGGCT
ATGACTGGGTCACCGCCTTCGAGAAGGAGAGCGGCTGCAAGGTCAACGTCAAGACCGCCAACACCTCCGACGAGATGGTC
TCGCTGATGAACGAGGGGGGCTTCGACCTCGTCACGGCTTCGGGCGATGCTTCGCTGCGCCTCGTCGCCGGCAAGCGCGT
GCAGCCGATCAACACCGATCTCATCCCGAGCTGGAAGACGGTCGACGACCGGCTGAAGGACGCCCCCTGGTTCACCGTCG
ACAAGGTGCATTACGGCGTTCCTTACCAGTGGGGACCGAACATCCTGATGTACAACACCGAGGTGTTCAAGGAAGCGCCC
AAGAGCTGGAACGTCGTCTTCGAGGAGATGAAGCTGCCGGACGGCAAGTCCAACAAGGGCCGCGTCCAGGCCTATGACGG
GCCGATCCACATCGCCGATGCTGCCAACTATCTGATGTTCCATAAGCCGGAACTCGGCATCAAGGATCCCTACGAACTCA
ACGAAGACCAGTACAAGGCGGCGCTCGAACTGCTGCGCGTGCAGCGCACGCTGGTTGGCCGCTACTGGCATGATGCAGCC
ATCCAGGTCGACGATTTCCAGAATGAAGGTGTCGTCGCCTCCGGTTCGTGGCCGTATCAGGTCAACACGCTGGTCGCGGC
CAAGAAGCCGGTTGCCTCGACCGTGCCGGAAGAAGGCGTCACCGGCTGGGCCGACACCACCATGATGGAAGCCGACGCGG
CGCACCCGAACTGCGCCTATATGTGGCTCGAACATTCGCTGTCGCCGAAAGTGCAGGGTGATGTCTCGGCCTGGTTCGGA
TCGCTCCCCGTGGTGCCCGCCGCCTGCAAGGGCAACGAGCTCCTGACCGATGAAGGCTGCAAGACCAACGGCTACGACAA
TTTCGACAAGATCAAGTTCTGGAAGACGCCGGTCTCGAAATGCGCCACCCAGAACGACCAGTGCGTGCCCTACTACCGCT
GGGTGTCGGACTATATCGGCGTCATCGGCGGACGGTGA

Upstream 100 bases:

>100_bases
GACATCAAGTCCACAGGACGAACTGATATGTTTTTCAGTCCGCGCGTGATCTGGCGACAACCGGAGCGGTTTCGGGGGCA
TGCGCCAAAATGGGAGATCG

Downstream 100 bases:

>100_bases
TTCCGCTTCGCTGAGAACATAGCGCTGCCCCTCACCCTTACCCTCTCCCCCGTGAAGAACGGGGAGAGGGGGGGTCGCCA
GCGTTCCCCGTCACTATACG

Product: ABC transporter, binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MMNSFLKSCTALTVALTFSGQAIAQVKELGKGEGQVNIVAWPGYIERGETDKGYDWVTAFEKESGCKVNVKTANTSDEMV
SLMNEGGFDLVTASGDASLRLVAGKRVQPINTDLIPSWKTVDDRLKDAPWFTVDKVHYGVPYQWGPNILMYNTEVFKEAP
KSWNVVFEEMKLPDGKSNKGRVQAYDGPIHIADAANYLMFHKPELGIKDPYELNEDQYKAALELLRVQRTLVGRYWHDAA
IQVDDFQNEGVVASGSWPYQVNTLVAAKKPVASTVPEEGVTGWADTTMMEADAAHPNCAYMWLEHSLSPKVQGDVSAWFG
SLPVVPAACKGNELLTDEGCKTNGYDNFDKIKFWKTPVSKCATQNDQCVPYYRWVSDYIGVIGGR

Sequences:

>Translated_385_residues
MMNSFLKSCTALTVALTFSGQAIAQVKELGKGEGQVNIVAWPGYIERGETDKGYDWVTAFEKESGCKVNVKTANTSDEMV
SLMNEGGFDLVTASGDASLRLVAGKRVQPINTDLIPSWKTVDDRLKDAPWFTVDKVHYGVPYQWGPNILMYNTEVFKEAP
KSWNVVFEEMKLPDGKSNKGRVQAYDGPIHIADAANYLMFHKPELGIKDPYELNEDQYKAALELLRVQRTLVGRYWHDAA
IQVDDFQNEGVVASGSWPYQVNTLVAAKKPVASTVPEEGVTGWADTTMMEADAAHPNCAYMWLEHSLSPKVQGDVSAWFG
SLPVVPAACKGNELLTDEGCKTNGYDNFDKIKFWKTPVSKCATQNDQCVPYYRWVSDYIGVIGGR
>Mature_385_residues
MMNSFLKSCTALTVALTFSGQAIAQVKELGKGEGQVNIVAWPGYIERGETDKGYDWVTAFEKESGCKVNVKTANTSDEMV
SLMNEGGFDLVTASGDASLRLVAGKRVQPINTDLIPSWKTVDDRLKDAPWFTVDKVHYGVPYQWGPNILMYNTEVFKEAP
KSWNVVFEEMKLPDGKSNKGRVQAYDGPIHIADAANYLMFHKPELGIKDPYELNEDQYKAALELLRVQRTLVGRYWHDAA
IQVDDFQNEGVVASGSWPYQVNTLVAAKKPVASTVPEEGVTGWADTTMMEADAAHPNCAYMWLEHSLSPKVQGDVSAWFG
SLPVVPAACKGNELLTDEGCKTNGYDNFDKIKFWKTPVSKCATQNDQCVPYYRWVSDYIGVIGGR

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein potD/potF family [H]

Homologues:

Organism=Escherichia coli, GI1787711, Length=385, Percent_Identity=61.2987012987013, Blast_Score=508, Evalue=1e-145,
Organism=Escherichia coli, GI1787078, Length=308, Percent_Identity=28.2467532467532, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR001188 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 42738; Mature: 42738

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNSFLKSCTALTVALTFSGQAIAQVKELGKGEGQVNIVAWPGYIERGETDKGYDWVTAF
CCHHHHHHHHEEEEEEEECCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCEEEEE
EKESGCKVNVKTANTSDEMVSLMNEGGFDLVTASGDASLRLVAGKRVQPINTDLIPSWKT
ECCCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCC
VDDRLKDAPWFTVDKVHYGVPYQWGPNILMYNTEVFKEAPKSWNVVFEEMKLPDGKSNKG
HHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEHHHHHHCCCCHHEEEEEHCCCCCCCCCC
RVQAYDGPIHIADAANYLMFHKPELGIKDPYELNEDQYKAALELLRVQRTLVGRYWHDAA
EEEEECCCEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCE
IQVDDFQNEGVVASGSWPYQVNTLVAAKKPVASTVPEEGVTGWADTTMMEADAAHPNCAY
EEEECCCCCCEEECCCCCEEEEEEEECCCCHHHCCCCCCCCCCCCCEEEECCCCCCCEEE
MWLEHSLSPKVQGDVSAWFGSLPVVPAACKGNELLTDEGCKTNGYDNFDKIKFWKTPVSK
EEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHEEEECCCHHH
CATQNDQCVPYYRWVSDYIGVIGGR
HCCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMNSFLKSCTALTVALTFSGQAIAQVKELGKGEGQVNIVAWPGYIERGETDKGYDWVTAF
CCHHHHHHHHEEEEEEEECCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCEEEEE
EKESGCKVNVKTANTSDEMVSLMNEGGFDLVTASGDASLRLVAGKRVQPINTDLIPSWKT
ECCCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCC
VDDRLKDAPWFTVDKVHYGVPYQWGPNILMYNTEVFKEAPKSWNVVFEEMKLPDGKSNKG
HHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEHHHHHHCCCCHHEEEEEHCCCCCCCCCC
RVQAYDGPIHIADAANYLMFHKPELGIKDPYELNEDQYKAALELLRVQRTLVGRYWHDAA
EEEEECCCEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCE
IQVDDFQNEGVVASGSWPYQVNTLVAAKKPVASTVPEEGVTGWADTTMMEADAAHPNCAY
EEEECCCCCCEEECCCCCEEEEEEEECCCCHHHCCCCCCCCCCCCCEEEECCCCCCCEEE
MWLEHSLSPKVQGDVSAWFGSLPVVPAACKGNELLTDEGCKTNGYDNFDKIKFWKTPVSK
EEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHEEEECCCHHH
CATQNDQCVPYYRWVSDYIGVIGGR
HCCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]