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The map label for this gene is yciR [C]

Identifier: 13474317

GI number: 13474317

Start: 4110527

End: 4112866

Strand: Direct

Name: yciR [C]

Synonym: mlr5176

Alternate gene names: 13474317

Gene position: 4110527-4112866 (Clockwise)

Preceding gene: 13474316

Following gene: 13474318

Centisome position: 58.42

GC content: 61.37

Gene sequence:

>2340_bases
ATGGGCAGAACAAAAACTGAGAACATCCCGGCGGATGTTTATATCCAGTTTGTGCGGTCGTTGTTCGACAACGCCCACAT
GCTGGTAATCGGCGGCGTATGCTACTGGATCCTCGGATTCATGATCTACTTGCGTATGCACAACCCATTGTTCCTGGGTT
TTTCTTTTGGTCTGCTGTCCATCAGCCTTTTCCGCTACTCCGGCATTCGCGGGTTCCGGAAGGCGGGCGGCGTAATAGCC
AATGTTGAAGAGGCGCGGCGGTGGGAGCGCACCTATATCCTGAAGGGCAGCCTGCAGGGCCTCGGCCTGGGCGCGCTGTG
CTTCATATCGATCTATGTCTATCCCGATCCCTTCGCCGAACTGGCCGCGACGTCGCTGGCCATCGCCACCTTGGTGACGG
TCGTTGGCCGCAACTATGGCTCGCCGCTCATGGTGCGGATCTTTTCCGTGACCTTCATTGGTCCGGCGGCACTGGCACTC
TTGCTGCGCATGGATGTCCCCTCGGTCGTTCTCGGCTTGATGATCATCCCGTTGACTTTCATCACCATCAACAGCGCCGA
CCACGTCCGCAACGTGCTTTTCTCGGCCGTTATCGGCCACAAGGAAGCGAGGAAGCTCGCGTTAAGGTTCGACCGCGCCC
TCAACACCATGTCGCACGGCCTTGTCATGCTCGGTCCCGACGGCCGGGTGGCGGTGGCCAATGCCGAAGCTGCCCATCTG
ATGTCGCTCAAATCCGCGAATGCGCTGCTCGGGCGGTCGATCCATGGTCTTTTGATGCGCGGAGTCGCCGGCGGCATGCT
GGCGCCGAAGGACTGCCGCTACATCGAGGCCCAGCTGACGCGGGCCTTGCGCGAGGGGCGCGACCGCAAGGTCCTGGTAT
CGCTGGCCAATGGCCAGCATTATGAATTCTCGGCCCGCGAAGGCAGCCAGGAACTCGGCGTCATCACCTTCGAGGACGTG
ACGGCGCGCGTCGAGGCTGAAGACAAGATCCGCTTCATGGCGCGTTACGACAATCTCACCGGCCTGCCCAATCGCGCCTA
TTTCCACGAACTGGTCGGTGAGGCGATGGCGTCAGGCGATCGCGACCGTTTCTGCGGCCTGGCCGTGCTCGACCTCGACG
ATTTCAAGAGCGTCAACGATACGCTCGGCCATCCGATCGGCGACGGGTTGATCTACGCGGTCGCCGAGCGTCTTGCCGCC
GTTGCCGGACAAGGCATCACCGTCAGCCGTTTCGGCGGCGACGAATTCATGGTCTTCTTCGACCGCATCGAGGATGAGAG
CCATCTGACCACGCAGACCGACGAGATCTTCGCGGCATTGCAGGGCGAGGTGGACGTCGCCGGCCATGGGCTGCGCATCC
AGACCAGTGGCGGCGCGGTATTGGCGCGGGTCAGGGACAGCGATGTCGACGCCATGATCGTCAAGGCGGATCTGGCGCTT
TACAAGGCCAAGGAGCTTGGCAAGAACGGCTGGCGGCTGTTCGAGGCGGCAATGGACGCCGCGTTCCGCAACCGGCAGCT
GATGAAGGCGGATCTGCGCAGCGCCGTGGAAAGCAAGAGCCTGCGGGTCGTCTACCAGCCGATCGTGGCGATGAACACCA
TGCGCATCGCCAGCTGCGAGGCGCTGTGCCGCTGGGATCATCCCGACCTTGGACCGATTTCGCCAAGCATCTTCATTCCG
CTGGCCGAGGAAATGGGCATCATTTCCGAGATCAGCACTTTCGTGCTGCAGGCAGCCTGCACCGAATGCGCCAAATGGCC
CGATCAGACAAGCGTCTCGGTCAACCTCTCGGCCAAGGATTTCCGCAGCCGCGATGTCATCCAGAAGGTTCGCGATGCGC
TGGCGAGTTCCGGCCTCGCCGCCGGCCGGCTGGAGATCGAGGTCACCGAAACGGCGCTGCTCGACGACAAGTCGCTGACG
CGCCAGTATATCGAGGAGCTCAAGCAGATCGGTGTTCGCATCGCGCTCGACGATTTCGGCACCGGCTATTCGAGCCTGAG
CTACCTCCACAAACTGCCGCTCGACAAGATCAAGATCGACCGCTCGTTCCTGATGGACGTCACCCAGAACGCGCGTTCGC
TGGAACTGCTCAAGGGCATCGTCAATCTGTCACGGCCACTGGGGCTTTCCGTGACCGTCGAAGGCGTCGAGACCTTCGAA
CAGCTCAAGATCCTGGCCTTGCAGGTCAAACCGGATCTCGTGCAAGGCTTCCTGTTCGGTGCCGCGCTCAGTGCGTCGGG
TATCGAGACGATGTCGAATGTCACTTGGCCATTTGCAGCCGACCTGCGTCGTGCCGGCAAACGGACAGTCATTAGCTCCG
TGATTTCGCAGGGCGCTTAA

Upstream 100 bases:

>100_bases
TCCTGCATTTGCGGGCCCTTGGCACCTCAGTCGAAGTCCCTGTTCTAAGCCTTTCTTAAGGCGGGTGTGACATGACAAGG
CTTAGCGTTGGGCCGACAAT

Downstream 100 bases:

>100_bases
TTCCCGACGTTTTTCGATTCAAGCACGGCCTTTGATATCGAACTCATCCGCCTCCTCATCGTCCCGCCGCGATTTTGCTT
TCACGCAATGCTGCTGAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 779; Mature: 778

Protein sequence:

>779_residues
MGRTKTENIPADVYIQFVRSLFDNAHMLVIGGVCYWILGFMIYLRMHNPLFLGFSFGLLSISLFRYSGIRGFRKAGGVIA
NVEEARRWERTYILKGSLQGLGLGALCFISIYVYPDPFAELAATSLAIATLVTVVGRNYGSPLMVRIFSVTFIGPAALAL
LLRMDVPSVVLGLMIIPLTFITINSADHVRNVLFSAVIGHKEARKLALRFDRALNTMSHGLVMLGPDGRVAVANAEAAHL
MSLKSANALLGRSIHGLLMRGVAGGMLAPKDCRYIEAQLTRALREGRDRKVLVSLANGQHYEFSAREGSQELGVITFEDV
TARVEAEDKIRFMARYDNLTGLPNRAYFHELVGEAMASGDRDRFCGLAVLDLDDFKSVNDTLGHPIGDGLIYAVAERLAA
VAGQGITVSRFGGDEFMVFFDRIEDESHLTTQTDEIFAALQGEVDVAGHGLRIQTSGGAVLARVRDSDVDAMIVKADLAL
YKAKELGKNGWRLFEAAMDAAFRNRQLMKADLRSAVESKSLRVVYQPIVAMNTMRIASCEALCRWDHPDLGPISPSIFIP
LAEEMGIISEISTFVLQAACTECAKWPDQTSVSVNLSAKDFRSRDVIQKVRDALASSGLAAGRLEIEVTETALLDDKSLT
RQYIEELKQIGVRIALDDFGTGYSSLSYLHKLPLDKIKIDRSFLMDVTQNARSLELLKGIVNLSRPLGLSVTVEGVETFE
QLKILALQVKPDLVQGFLFGAALSASGIETMSNVTWPFAADLRRAGKRTVISSVISQGA

Sequences:

>Translated_779_residues
MGRTKTENIPADVYIQFVRSLFDNAHMLVIGGVCYWILGFMIYLRMHNPLFLGFSFGLLSISLFRYSGIRGFRKAGGVIA
NVEEARRWERTYILKGSLQGLGLGALCFISIYVYPDPFAELAATSLAIATLVTVVGRNYGSPLMVRIFSVTFIGPAALAL
LLRMDVPSVVLGLMIIPLTFITINSADHVRNVLFSAVIGHKEARKLALRFDRALNTMSHGLVMLGPDGRVAVANAEAAHL
MSLKSANALLGRSIHGLLMRGVAGGMLAPKDCRYIEAQLTRALREGRDRKVLVSLANGQHYEFSAREGSQELGVITFEDV
TARVEAEDKIRFMARYDNLTGLPNRAYFHELVGEAMASGDRDRFCGLAVLDLDDFKSVNDTLGHPIGDGLIYAVAERLAA
VAGQGITVSRFGGDEFMVFFDRIEDESHLTTQTDEIFAALQGEVDVAGHGLRIQTSGGAVLARVRDSDVDAMIVKADLAL
YKAKELGKNGWRLFEAAMDAAFRNRQLMKADLRSAVESKSLRVVYQPIVAMNTMRIASCEALCRWDHPDLGPISPSIFIP
LAEEMGIISEISTFVLQAACTECAKWPDQTSVSVNLSAKDFRSRDVIQKVRDALASSGLAAGRLEIEVTETALLDDKSLT
RQYIEELKQIGVRIALDDFGTGYSSLSYLHKLPLDKIKIDRSFLMDVTQNARSLELLKGIVNLSRPLGLSVTVEGVETFE
QLKILALQVKPDLVQGFLFGAALSASGIETMSNVTWPFAADLRRAGKRTVISSVISQGA
>Mature_778_residues
GRTKTENIPADVYIQFVRSLFDNAHMLVIGGVCYWILGFMIYLRMHNPLFLGFSFGLLSISLFRYSGIRGFRKAGGVIAN
VEEARRWERTYILKGSLQGLGLGALCFISIYVYPDPFAELAATSLAIATLVTVVGRNYGSPLMVRIFSVTFIGPAALALL
LRMDVPSVVLGLMIIPLTFITINSADHVRNVLFSAVIGHKEARKLALRFDRALNTMSHGLVMLGPDGRVAVANAEAAHLM
SLKSANALLGRSIHGLLMRGVAGGMLAPKDCRYIEAQLTRALREGRDRKVLVSLANGQHYEFSAREGSQELGVITFEDVT
ARVEAEDKIRFMARYDNLTGLPNRAYFHELVGEAMASGDRDRFCGLAVLDLDDFKSVNDTLGHPIGDGLIYAVAERLAAV
AGQGITVSRFGGDEFMVFFDRIEDESHLTTQTDEIFAALQGEVDVAGHGLRIQTSGGAVLARVRDSDVDAMIVKADLALY
KAKELGKNGWRLFEAAMDAAFRNRQLMKADLRSAVESKSLRVVYQPIVAMNTMRIASCEALCRWDHPDLGPISPSIFIPL
AEEMGIISEISTFVLQAACTECAKWPDQTSVSVNLSAKDFRSRDVIQKVRDALASSGLAAGRLEIEVTETALLDDKSLTR
QYIEELKQIGVRIALDDFGTGYSSLSYLHKLPLDKIKIDRSFLMDVTQNARSLELLKGIVNLSRPLGLSVTVEGVETFEQ
LKILALQVKPDLVQGFLFGAALSASGIETMSNVTWPFAADLRRAGKRTVISSVISQGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=434, Percent_Identity=32.7188940092166, Blast_Score=231, Evalue=2e-61,
Organism=Escherichia coli, GI87081921, Length=444, Percent_Identity=31.7567567567568, Blast_Score=219, Evalue=5e-58,
Organism=Escherichia coli, GI226510982, Length=425, Percent_Identity=25.8823529411765, Blast_Score=145, Evalue=1e-35,
Organism=Escherichia coli, GI87081845, Length=250, Percent_Identity=36.4, Blast_Score=133, Evalue=5e-32,
Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=34.7280334728033, Blast_Score=133, Evalue=5e-32,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=32.6530612244898, Blast_Score=126, Evalue=5e-30,
Organism=Escherichia coli, GI1787055, Length=453, Percent_Identity=24.7240618101545, Blast_Score=126, Evalue=6e-30,
Organism=Escherichia coli, GI1786507, Length=236, Percent_Identity=31.3559322033898, Blast_Score=123, Evalue=6e-29,
Organism=Escherichia coli, GI1788502, Length=237, Percent_Identity=29.1139240506329, Blast_Score=115, Evalue=2e-26,
Organism=Escherichia coli, GI87081980, Length=222, Percent_Identity=34.2342342342342, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1788849, Length=242, Percent_Identity=30.5785123966942, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI87082096, Length=237, Percent_Identity=28.2700421940928, Blast_Score=87, Evalue=5e-18,
Organism=Escherichia coli, GI1786584, Length=179, Percent_Identity=29.608938547486, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1788381, Length=434, Percent_Identity=24.6543778801843, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI1787262, Length=159, Percent_Identity=32.7044025157233, Blast_Score=80, Evalue=7e-16,
Organism=Escherichia coli, GI1788956, Length=175, Percent_Identity=32, Blast_Score=77, Evalue=6e-15,
Organism=Escherichia coli, GI87081881, Length=181, Percent_Identity=29.2817679558011, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081977, Length=151, Percent_Identity=33.112582781457, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787816, Length=158, Percent_Identity=32.9113924050633, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 85275; Mature: 85144

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS00639 THIOL_PROTEASE_HIS ; PS50883 EAL ; PS50887 GGDEF ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRTKTENIPADVYIQFVRSLFDNAHMLVIGGVCYWILGFMIYLRMHNPLFLGFSFGLLS
CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCCEEEEHHHHHHH
ISLFRYSGIRGFRKAGGVIANVEEARRWERTYILKGSLQGLGLGALCFISIYVYPDPFAE
HHHHHHHCCCHHHHHCCEEEEHHHHHHHHHEEEEECCCCCCCHHEEEEEEEEECCCCHHH
LAATSLAIATLVTVVGRNYGSPLMVRIFSVTFIGPAALALLLRMDVPSVVLGLMIIPLTF
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
ITINSADHVRNVLFSAVIGHKEARKLALRFDRALNTMSHGLVMLGPDGRVAVANAEAAHL
EEECCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEECCCHHHH
MSLKSANALLGRSIHGLLMRGVAGGMLAPKDCRYIEAQLTRALREGRDRKVLVSLANGQH
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCE
YEFSAREGSQELGVITFEDVTARVEAEDKIRFMARYDNLTGLPNRAYFHELVGEAMASGD
EEEECCCCCCCCCEEEEECCEEEECCHHHHEEHEECCCCCCCCCHHHHHHHHHHHHHCCC
RDRFCGLAVLDLDDFKSVNDTLGHPIGDGLIYAVAERLAAVAGQGITVSRFGGDEFMVFF
CCCCCCEEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEE
DRIEDESHLTTQTDEIFAALQGEVDVAGHGLRIQTSGGAVLARVRDSDVDAMIVKADLAL
ECCCCCCCCCCHHHHHHHHHCCCEEECCCCEEEEECCCEEEEEEECCCCCEEEEEHHHHH
YKAKELGKNGWRLFEAAMDAAFRNRQLMKADLRSAVESKSLRVVYQPIVAMNTMRIASCE
HHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHH
ALCRWDHPDLGPISPSIFIPLAEEMGIISEISTFVLQAACTECAKWPDQTSVSVNLSAKD
HHHCCCCCCCCCCCCCEEEECHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHH
FRSRDVIQKVRDALASSGLAAGRLEIEVTETALLDDKSLTRQYIEELKQIGVRIALDDFG
HHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHCCEEEEEECCC
TGYSSLSYLHKLPLDKIKIDRSFLMDVTQNARSLELLKGIVNLSRPLGLSVTVEGVETFE
CCHHHHHHHHHCCHHHEEHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHH
QLKILALQVKPDLVQGFLFGAALSASGIETMSNVTWPFAADLRRAGKRTVISSVISQGA
HHHHEEEEECHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure 
GRTKTENIPADVYIQFVRSLFDNAHMLVIGGVCYWILGFMIYLRMHNPLFLGFSFGLLS
CCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCCEEEEHHHHHHH
ISLFRYSGIRGFRKAGGVIANVEEARRWERTYILKGSLQGLGLGALCFISIYVYPDPFAE
HHHHHHHCCCHHHHHCCEEEEHHHHHHHHHEEEEECCCCCCCHHEEEEEEEEECCCCHHH
LAATSLAIATLVTVVGRNYGSPLMVRIFSVTFIGPAALALLLRMDVPSVVLGLMIIPLTF
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
ITINSADHVRNVLFSAVIGHKEARKLALRFDRALNTMSHGLVMLGPDGRVAVANAEAAHL
EEECCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEECCCHHHH
MSLKSANALLGRSIHGLLMRGVAGGMLAPKDCRYIEAQLTRALREGRDRKVLVSLANGQH
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCE
YEFSAREGSQELGVITFEDVTARVEAEDKIRFMARYDNLTGLPNRAYFHELVGEAMASGD
EEEECCCCCCCCCEEEEECCEEEECCHHHHEEHEECCCCCCCCCHHHHHHHHHHHHHCCC
RDRFCGLAVLDLDDFKSVNDTLGHPIGDGLIYAVAERLAAVAGQGITVSRFGGDEFMVFF
CCCCCCEEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEE
DRIEDESHLTTQTDEIFAALQGEVDVAGHGLRIQTSGGAVLARVRDSDVDAMIVKADLAL
ECCCCCCCCCCHHHHHHHHHCCCEEECCCCEEEEECCCEEEEEEECCCCCEEEEEHHHHH
YKAKELGKNGWRLFEAAMDAAFRNRQLMKADLRSAVESKSLRVVYQPIVAMNTMRIASCE
HHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHH
ALCRWDHPDLGPISPSIFIPLAEEMGIISEISTFVLQAACTECAKWPDQTSVSVNLSAKD
HHHCCCCCCCCCCCCCEEEECHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHH
FRSRDVIQKVRDALASSGLAAGRLEIEVTETALLDDKSLTRQYIEELKQIGVRIALDDFG
HHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHCCEEEEEECCC
TGYSSLSYLHKLPLDKIKIDRSFLMDVTQNARSLELLKGIVNLSRPLGLSVTVEGVETFE
CCHHHHHHHHHCCHHHEEHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHH
QLKILALQVKPDLVQGFLFGAALSASGIETMSNVTWPFAADLRRAGKRTVISSVISQGA
HHHHEEEEECHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]