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The map label for this gene is ycaN [H]

Identifier: 13474213

GI number: 13474213

Start: 4000894

End: 4001784

Strand: Reverse

Name: ycaN [H]

Synonym: mll5050

Alternate gene names: 13474213

Gene position: 4001784-4000894 (Counterclockwise)

Preceding gene: 13474215

Following gene: 13474212

Centisome position: 56.88

GC content: 66.89

Gene sequence:

>891_bases
ATGAACCGAGCACATCTCTCACAGCTTGCCGTGCTGGCGACCGTTGCCCAATGCGGCAGTTTTCGCGGCGCGGCCAGGGA
ATTGGCCATCGCGCCGTCGGCGGTCAGCCATGCGGTGTCCAGTCTGGAGGCACGGCTCGGCGTGCGGCTCCTTGCGCGCA
GCACGCGCAGCGTCGCGCCGACGGAAGAGGGCGCGCAATTGCTGGAGCGGTTACGTCCTGCCCTTTCCGAAATCGACCTG
GCTCTGGAGACGGCACTTGAGGCGCGCGACCGGCCGGCCGGGAATCTGCGGCTCAGCGTGCCGCGCACGGCGGCGCATCT
GGTGCTGACGCCACGGCTCGGCGCATTTGCCAAGGCCTATCCCGACATCGTGCTGGAGATCCTCATCGAGGATCGTTTCA
CCGATGTGGTGGAAGGCGGCTTCGACGCCGGCGTGCGGCTCGGCGAGAGCCTGCAGCGTGACATGATCGCGGTGCGTATC
GGGCCGGACATGCGCGGCGCAGTGGTCGGCGCGCCATCCTATTTCGCGGCCATGCCGAGGCCGCATCATCCGCGCGACCT
TGCCGATCATCGCTGCATCCGCTTCCGCTTCTCCAGCGGCATTCTCTACCGCTGGGAATTCGCGAAGGGCGGCGAAGAAA
TCGAGATCGCCGCGCAGGGGCCGCTGATCCTCGACGAGGACCATCTGATCGCGCAAGCCGCGATCGATGGCACAGGCCTC
GCCTTCGTCTTCGAGCCTTATGTGCGGGCGCCGCTCGCCGACGGCAGGCTGATCCGCGTGCTGGAGGACTGGTGCCCGCC
CTTCGAGGGGTTCTTCGTCTATTACCCCAGCCGCAGGCAGATGCGCCCGGCGCTCAGGGCGTTCGTGGATTTCTTCAAGG
TGAGCGGTTAG

Upstream 100 bases:

>100_bases
GCATCACGCGTCTCCTTGTTGTGATGCAGCAGAAATAGCGCCTTGCAGTCTGTTCGATAATCGGCTCTTCTTCGTACGGC
CCGTTCCAAGAAATAGATCA

Downstream 100 bases:

>100_bases
GGCACGCCCCTCACCCTCCCCCTTGTGGGGAGGGTGAGGGGCGTTGGAAGAAAGTTCTGTCCAGCGTCGTTCACACACAA
TGCAGTCAATCACCAACACC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MNRAHLSQLAVLATVAQCGSFRGAARELAIAPSAVSHAVSSLEARLGVRLLARSTRSVAPTEEGAQLLERLRPALSEIDL
ALETALEARDRPAGNLRLSVPRTAAHLVLTPRLGAFAKAYPDIVLEILIEDRFTDVVEGGFDAGVRLGESLQRDMIAVRI
GPDMRGAVVGAPSYFAAMPRPHHPRDLADHRCIRFRFSSGILYRWEFAKGGEEIEIAAQGPLILDEDHLIAQAAIDGTGL
AFVFEPYVRAPLADGRLIRVLEDWCPPFEGFFVYYPSRRQMRPALRAFVDFFKVSG

Sequences:

>Translated_296_residues
MNRAHLSQLAVLATVAQCGSFRGAARELAIAPSAVSHAVSSLEARLGVRLLARSTRSVAPTEEGAQLLERLRPALSEIDL
ALETALEARDRPAGNLRLSVPRTAAHLVLTPRLGAFAKAYPDIVLEILIEDRFTDVVEGGFDAGVRLGESLQRDMIAVRI
GPDMRGAVVGAPSYFAAMPRPHHPRDLADHRCIRFRFSSGILYRWEFAKGGEEIEIAAQGPLILDEDHLIAQAAIDGTGL
AFVFEPYVRAPLADGRLIRVLEDWCPPFEGFFVYYPSRRQMRPALRAFVDFFKVSG
>Mature_296_residues
MNRAHLSQLAVLATVAQCGSFRGAARELAIAPSAVSHAVSSLEARLGVRLLARSTRSVAPTEEGAQLLERLRPALSEIDL
ALETALEARDRPAGNLRLSVPRTAAHLVLTPRLGAFAKAYPDIVLEILIEDRFTDVVEGGFDAGVRLGESLQRDMIAVRI
GPDMRGAVVGAPSYFAAMPRPHHPRDLADHRCIRFRFSSGILYRWEFAKGGEEIEIAAQGPLILDEDHLIAQAAIDGTGL
AFVFEPYVRAPLADGRLIRVLEDWCPPFEGFFVYYPSRRQMRPALRAFVDFFKVSG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=42.8082191780822, Blast_Score=249, Evalue=1e-67,
Organism=Escherichia coli, GI1787589, Length=297, Percent_Identity=41.0774410774411, Blast_Score=228, Evalue=4e-61,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=29.7945205479452, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI87081978, Length=288, Percent_Identity=29.8611111111111, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1789440, Length=288, Percent_Identity=27.0833333333333, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=28.6689419795222, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789639, Length=291, Percent_Identity=26.1168384879725, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786448, Length=302, Percent_Identity=27.1523178807947, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788706, Length=146, Percent_Identity=32.1917808219178, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1789173, Length=269, Percent_Identity=29.368029739777, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788748, Length=152, Percent_Identity=36.8421052631579, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787879, Length=159, Percent_Identity=32.7044025157233, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32496; Mature: 32496

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRAHLSQLAVLATVAQCGSFRGAARELAIAPSAVSHAVSSLEARLGVRLLARSTRSVAP
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TEEGAQLLERLRPALSEIDLALETALEARDRPAGNLRLSVPRTAAHLVLTPRLGAFAKAY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEECCCHHHHHHHH
PDIVLEILIEDRFTDVVEGGFDAGVRLGESLQRDMIAVRIGPDMRGAVVGAPSYFAAMPR
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCHHHHCCCC
PHHPRDLADHRCIRFRFSSGILYRWEFAKGGEEIEIAAQGPLILDEDHLIAQAAIDGTGL
CCCCCCHHCCCEEEEEECCCEEEEEEECCCCCEEEEEECCCEEECCCCEEEEEEECCCCE
AFVFEPYVRAPLADGRLIRVLEDWCPPFEGFFVYYPSRRQMRPALRAFVDFFKVSG
EEEECHHHHCCCCCCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNRAHLSQLAVLATVAQCGSFRGAARELAIAPSAVSHAVSSLEARLGVRLLARSTRSVAP
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TEEGAQLLERLRPALSEIDLALETALEARDRPAGNLRLSVPRTAAHLVLTPRLGAFAKAY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEECCCHHHHHHHH
PDIVLEILIEDRFTDVVEGGFDAGVRLGESLQRDMIAVRIGPDMRGAVVGAPSYFAAMPR
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCHHHHCCCC
PHHPRDLADHRCIRFRFSSGILYRWEFAKGGEEIEIAAQGPLILDEDHLIAQAAIDGTGL
CCCCCCHHCCCEEEEEECCCEEEEEEECCCCCEEEEEECCCEEECCCCEEEEEEECCCCE
AFVFEPYVRAPLADGRLIRVLEDWCPPFEGFFVYYPSRRQMRPALRAFVDFFKVSG
EEEECHHHHCCCCCCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]