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The map label for this gene is glxA [H]

Identifier: 13474201

GI number: 13474201

Start: 3987853

End: 3988833

Strand: Reverse

Name: glxA [H]

Synonym: mll5038

Alternate gene names: 13474201

Gene position: 3988833-3987853 (Counterclockwise)

Preceding gene: 13474209

Following gene: 13474198

Centisome position: 56.69

GC content: 67.18

Gene sequence:

>981_bases
ATGACAAAAAACGAAAAGGCGACAATCTTTCGCGCCGAGCAGTCGCCGCTCAAGGTGACGTTGCTGGTGTTTTCCGGTGC
ATCCATCATGTGCGTGGCGTGCGCCGTCGATCCGCTGCGGGCCGCCAACCGCATCGCCGGCGAAACGCTGTTCGACTTCA
AACTGGTTTCGGTGACCGGGGAGGCGCCGGTCACGACATGCGGCCTGCCCGTGGCGGTCAGCGGCCGGTTCGATGCGACG
GAACCGACCGATGTCCTGGTCGTGGTCGCGGGCTTCGGCACACAGAATTATGCGACGTCGGCCCTGCTCGCCGGGCTGCG
CCGCGCGGCGCGGGCGGCCCGCGCCTGCGGCGGCGTCGAGGCGGGCACATGGCTGGTGGCGCGCGCAGGCTTGCTGGAAG
GACGCAGCGCCACCACCCATTGGGAGGACATGGAGGATTTTTCGTCGGCCTTTCCGGGCGTCGACGTGCGCCCCGATCGA
TACATCATCGATGGGCCGGTGTTCACCACGGGTGGTGCGTCGCCGACCCTGGACCTGATGCTGCACCTGATTCGCACCCG
GCTCGGCATGGCCGTGGCGCTCGATGTGGCAAGCGCGTTCATCTACGATCAGGCGCGCGTGGCGACCGATGCGCAGCCGC
TGGTCTCGCTTGGCCGGCTCGATGGCTACGATCCACGCCTGGCGCAGGCCATCCGGCTGATGGAAGCGCATGTCGACCAG
CCGCTGACCATCGAGGCCATAGGCAAGCGTGCCGGGGTAACGGCGCGGACATTGGAGAGCATCTTTCGCAAGTCGATCGG
CGAGACGCCGGGCGCCTATTATCTGAGGCTGCGGCTGGGGGCGGCGCGCCGGCTGGTGGTCGACACGCGCGTGGCCATGG
CGGATATTGCCGGGCGGACGGGATTCTCGTCCGCCGCGGCATTTTCCAGAGCGTTTTCAAGAGCGTTTGGCGAAGCCCCG
GTGAGGCTTCGCCGGGGTTAG

Upstream 100 bases:

>100_bases
GCCCAAAAGTGGGAACCGGTTTTGGGACAACGACATGCACAGGGACCCCCATAACATTGCGCGACTTGCAGGCAACTGTT
TTGCGCTTTACGAAGGCTGC

Downstream 100 bases:

>100_bases
GTCTGGGATTAGGCGGCGTTTTGCCTATCGCTGCCGGCATCGATCTGCGAGCGCATCTGTCTCACCAGCCGGATTTCAAA
GCGGTTGCTGACGGCGCGAT

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MTKNEKATIFRAEQSPLKVTLLVFSGASIMCVACAVDPLRAANRIAGETLFDFKLVSVTGEAPVTTCGLPVAVSGRFDAT
EPTDVLVVVAGFGTQNYATSALLAGLRRAARAARACGGVEAGTWLVARAGLLEGRSATTHWEDMEDFSSAFPGVDVRPDR
YIIDGPVFTTGGASPTLDLMLHLIRTRLGMAVALDVASAFIYDQARVATDAQPLVSLGRLDGYDPRLAQAIRLMEAHVDQ
PLTIEAIGKRAGVTARTLESIFRKSIGETPGAYYLRLRLGAARRLVVDTRVAMADIAGRTGFSSAAAFSRAFSRAFGEAP
VRLRRG

Sequences:

>Translated_326_residues
MTKNEKATIFRAEQSPLKVTLLVFSGASIMCVACAVDPLRAANRIAGETLFDFKLVSVTGEAPVTTCGLPVAVSGRFDAT
EPTDVLVVVAGFGTQNYATSALLAGLRRAARAARACGGVEAGTWLVARAGLLEGRSATTHWEDMEDFSSAFPGVDVRPDR
YIIDGPVFTTGGASPTLDLMLHLIRTRLGMAVALDVASAFIYDQARVATDAQPLVSLGRLDGYDPRLAQAIRLMEAHVDQ
PLTIEAIGKRAGVTARTLESIFRKSIGETPGAYYLRLRLGAARRLVVDTRVAMADIAGRTGFSSAAAFSRAFSRAFGEAP
VRLRRG
>Mature_325_residues
TKNEKATIFRAEQSPLKVTLLVFSGASIMCVACAVDPLRAANRIAGETLFDFKLVSVTGEAPVTTCGLPVAVSGRFDATE
PTDVLVVVAGFGTQNYATSALLAGLRRAARAARACGGVEAGTWLVARAGLLEGRSATTHWEDMEDFSSAFPGVDVRPDRY
IIDGPVFTTGGASPTLDLMLHLIRTRLGMAVALDVASAFIYDQARVATDAQPLVSLGRLDGYDPRLAQAIRLMEAHVDQP
LTIEAIGKRAGVTARTLESIFRKSIGETPGAYYLRLRLGAARRLVVDTRVAMADIAGRTGFSSAAAFSRAFSRAFGEAPV
RLRRG

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34679; Mature: 34548

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKNEKATIFRAEQSPLKVTLLVFSGASIMCVACAVDPLRAANRIAGETLFDFKLVSVTG
CCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEHHCCHHHHHHHHHCCCEEEEEEEEEEC
EAPVTTCGLPVAVSGRFDATEPTDVLVVVAGFGTQNYATSALLAGLRRAARAARACGGVE
CCCCEECCCCEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
AGTWLVARAGLLEGRSATTHWEDMEDFSSAFPGVDVRPDRYIIDGPVFTTGGASPTLDLM
CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCEEECCCCCHHHHHH
LHLIRTRLGMAVALDVASAFIYDQARVATDAQPLVSLGRLDGYDPRLAQAIRLMEAHVDQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
PLTIEAIGKRAGVTARTLESIFRKSIGETPGAYYLRLRLGAARRLVVDTRVAMADIAGRT
CEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEHHHHHHHHHHHCCCC
GFSSAAAFSRAFSRAFGEAPVRLRRG
CCHHHHHHHHHHHHHHCCCCEEECCC
>Mature Secondary Structure 
TKNEKATIFRAEQSPLKVTLLVFSGASIMCVACAVDPLRAANRIAGETLFDFKLVSVTG
CCCCCEEEEEECCCCCEEEEEEECCCCEEEEEHHCCHHHHHHHHHCCCEEEEEEEEEEC
EAPVTTCGLPVAVSGRFDATEPTDVLVVVAGFGTQNYATSALLAGLRRAARAARACGGVE
CCCCEECCCCEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
AGTWLVARAGLLEGRSATTHWEDMEDFSSAFPGVDVRPDRYIIDGPVFTTGGASPTLDLM
CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCEEECCCCCHHHHHH
LHLIRTRLGMAVALDVASAFIYDQARVATDAQPLVSLGRLDGYDPRLAQAIRLMEAHVDQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
PLTIEAIGKRAGVTARTLESIFRKSIGETPGAYYLRLRLGAARRLVVDTRVAMADIAGRT
CEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEHHHHHHHHHHHCCCC
GFSSAAAFSRAFSRAFGEAPVRLRRG
CCHHHHHHHHHHHHHHCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]