Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 13474150

GI number: 13474150

Start: 3940673

End: 3941719

Strand: Direct

Name: rbsC [H]

Synonym: mlr4968

Alternate gene names: 13474150

Gene position: 3940673-3941719 (Clockwise)

Preceding gene: 13474149

Following gene: 13474162

Centisome position: 56.01

GC content: 63.51

Gene sequence:

>1047_bases
TTGCGCTGCGAGACCGCGCAACCTGCCCAGGCAGGAATTGGGGAGACGACGATGAGCAAGAAAGATCTCGGCCTGCTGAT
CCTGATCCTGGTGGTCGGCGCGATCGTGGCCATCATCAATCCGCGCTTCCTCTTGCCGATCAACCTTGCCAACACCTCGA
ACCTGATCGGCCTGTTCGGCATCCTGTCGATCGGCCAGGCCTTCGTCATCATCACCGGCGGCATCGAGCTGTCGGTCGGC
TCGGTGGTGGCGCTGCTGGGAACACTGTTCATCGACTTCATCGCCGTGCGCGAACTGGACTGGCCGCTGGCCTTCGTGCT
GATCATCGCGCTTGGCGCCATCATCGGCCTGGTGCATGGCTGGCTGATCACCAGGCTGAAGCTGCAGCCCTTCGTCGTCA
CCTTGTGCGGCCTCTTGATCTATCGCGGCGTCGCCCGCTTCTACACCGCCGACGGCACCGCCGGTTTCGCCTTCGGCCAG
AATTTTCCCGAGCTCGAATTCCTGACGGCCGGGCGGTCCTATGGCGTGCCCAACAGTTTCATCGCGCTGATCGTCATCGC
CATCGTCATGTGGGTGGTGCTGCACCGGTCGGTGTTCGGCCGCTATCTCTACGCCATCGGCAAGAATGAGGAGGCGGCGA
AATATTCCGGCATCCGCACCGGCCGCATCGTCATGGCCGCCTATGTCATCTGCGGCGTGCTGACGGCGCTGTCGGCGATC
TATTTCGCCATGTACACGCGTTCGATCTCGCCGGCCAGCCATGGCCAGTTCTATGAGCTCTACGCCATCGCCGCCGCCGT
GCTCGGCGGCTTCTCGCTGCGCGGCGGCGAGGGCTCGCTGATCGGCGTCATCCTCGGAACGGTGCTGTTGCAGGAACTGC
AGAACCTGGTCAATCTGCTCGGCATCCCGTCCTCCCTCAACTTCGCGGTGATGGGCGGCGTCATTCTCATCGGCGTGCTC
GTCGACCAGCAATGGGGTGTGTTCCGCGCACGGCGGCTGATGGTCGATGCCGCCCGCAAGAACATTGCCGGCGCGCCGGC
GGAATAA

Upstream 100 bases:

>100_bases
CGTCATGCATGAGGGCCAGATCTCGGGCATTCTCGACAAGGACCAGTTCAGCCAGGAAAACGTGCTGCTGCTGGCGGTGG
GCAAGCAGCCGAAATAGTTT

Downstream 100 bases:

>100_bases
TCGCGCGGGCGACGCTGCCGCACGAAAAGCGCGTAGCGCTTTCCCTTGGGAATTGCGTCAAAACAAAGCGTTAAAGCAAC
CGCGCCAGCGCCAGCCCTAC

Product: sugar (D-ribose) ABC transporter, permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MRCETAQPAQAGIGETTMSKKDLGLLILILVVGAIVAIINPRFLLPINLANTSNLIGLFGILSIGQAFVIITGGIELSVG
SVVALLGTLFIDFIAVRELDWPLAFVLIIALGAIIGLVHGWLITRLKLQPFVVTLCGLLIYRGVARFYTADGTAGFAFGQ
NFPELEFLTAGRSYGVPNSFIALIVIAIVMWVVLHRSVFGRYLYAIGKNEEAAKYSGIRTGRIVMAAYVICGVLTALSAI
YFAMYTRSISPASHGQFYELYAIAAAVLGGFSLRGGEGSLIGVILGTVLLQELQNLVNLLGIPSSLNFAVMGGVILIGVL
VDQQWGVFRARRLMVDAARKNIAGAPAE

Sequences:

>Translated_348_residues
MRCETAQPAQAGIGETTMSKKDLGLLILILVVGAIVAIINPRFLLPINLANTSNLIGLFGILSIGQAFVIITGGIELSVG
SVVALLGTLFIDFIAVRELDWPLAFVLIIALGAIIGLVHGWLITRLKLQPFVVTLCGLLIYRGVARFYTADGTAGFAFGQ
NFPELEFLTAGRSYGVPNSFIALIVIAIVMWVVLHRSVFGRYLYAIGKNEEAAKYSGIRTGRIVMAAYVICGVLTALSAI
YFAMYTRSISPASHGQFYELYAIAAAVLGGFSLRGGEGSLIGVILGTVLLQELQNLVNLLGIPSSLNFAVMGGVILIGVL
VDQQWGVFRARRLMVDAARKNIAGAPAE
>Mature_348_residues
MRCETAQPAQAGIGETTMSKKDLGLLILILVVGAIVAIINPRFLLPINLANTSNLIGLFGILSIGQAFVIITGGIELSVG
SVVALLGTLFIDFIAVRELDWPLAFVLIIALGAIIGLVHGWLITRLKLQPFVVTLCGLLIYRGVARFYTADGTAGFAFGQ
NFPELEFLTAGRSYGVPNSFIALIVIAIVMWVVLHRSVFGRYLYAIGKNEEAAKYSGIRTGRIVMAAYVICGVLTALSAI
YFAMYTRSISPASHGQFYELYAIAAAVLGGFSLRGGEGSLIGVILGTVLLQELQNLVNLLGIPSSLNFAVMGGVILIGVL
VDQQWGVFRARRLMVDAARKNIAGAPAE

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=307, Percent_Identity=37.4592833876222, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI145693214, Length=262, Percent_Identity=33.969465648855, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI87082395, Length=336, Percent_Identity=31.547619047619, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1790524, Length=306, Percent_Identity=27.4509803921569, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI145693152, Length=300, Percent_Identity=31.6666666666667, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1787794, Length=313, Percent_Identity=32.2683706070287, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI1787793, Length=263, Percent_Identity=34.6007604562738, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789992, Length=128, Percent_Identity=38.28125, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1788896, Length=304, Percent_Identity=30.5921052631579, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788471, Length=266, Percent_Identity=32.3308270676692, Blast_Score=85, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 37121; Mature: 37121

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCETAQPAQAGIGETTMSKKDLGLLILILVVGAIVAIINPRFLLPINLANTSNLIGLFG
CCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH
ILSIGQAFVIITGGIELSVGSVVALLGTLFIDFIAVRELDWPLAFVLIIALGAIIGLVHG
HHHHCCEEEEEECCCEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
WLITRLKLQPFVVTLCGLLIYRGVARFYTADGTAGFAFGQNFPELEFLTAGRSYGVPNSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHH
IALIVIAIVMWVVLHRSVFGRYLYAIGKNEEAAKYSGIRTGRIVMAAYVICGVLTALSAI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
YFAMYTRSISPASHGQFYELYAIAAAVLGGFSLRGGEGSLIGVILGTVLLQELQNLVNLL
HHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHH
GIPSSLNFAVMGGVILIGVLVDQQWGVFRARRLMVDAARKNIAGAPAE
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRCETAQPAQAGIGETTMSKKDLGLLILILVVGAIVAIINPRFLLPINLANTSNLIGLFG
CCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH
ILSIGQAFVIITGGIELSVGSVVALLGTLFIDFIAVRELDWPLAFVLIIALGAIIGLVHG
HHHHCCEEEEEECCCEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
WLITRLKLQPFVVTLCGLLIYRGVARFYTADGTAGFAFGQNFPELEFLTAGRSYGVPNSF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHH
IALIVIAIVMWVVLHRSVFGRYLYAIGKNEEAAKYSGIRTGRIVMAAYVICGVLTALSAI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
YFAMYTRSISPASHGQFYELYAIAAAVLGGFSLRGGEGSLIGVILGTVLLQELQNLVNLL
HHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHH
GIPSSLNFAVMGGVILIGVLVDQQWGVFRARRLMVDAARKNIAGAPAE
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]