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The map label for this gene is ydhC [H]

Identifier: 13473980

GI number: 13473980

Start: 3768047

End: 3768793

Strand: Direct

Name: ydhC [H]

Synonym: mlr4749

Alternate gene names: 13473980

Gene position: 3768047-3768793 (Clockwise)

Preceding gene: 13473978

Following gene: 13473987

Centisome position: 53.55

GC content: 63.86

Gene sequence:

>747_bases
ATGAAGCCGACAAAAACCACGCCATCGAAATCGGTCACGCCCCCGGGCGGGACGGCGGCGCTGTCGACGGCGGACCTGCT
GCGCAGCGAACAGGCCTACGAACAGCTGAAGAGCGATATCGTCGCCTGCGTCCTGTCACCCGGTGAAGCCTTGACCGAAA
AGCAGATCGAGGCGCGCTACGGCATCAAGAAGGCGACGATCCGCTCCGCACTGGCCCGCCTCATGCAGGAAGGACTGGTC
CGGAGCGAGCCGCGCCGCGGCTATGTCATCACCACGCTAACCCTGCGCGACGTCAACGAGATCTTCGACGTGCGCAGCCT
GGTCGAGCCGGAAGTGTTCCGGGTTGCCACCACCGGCATTACCGAGCGCGGGCTGGATGAGATCAGGCTGGCGGCCAGAA
AGGTGCTGAAGCCCGAGACGCTGCGCAGCCCTGTTGCGTTCCTGGCCGCCGACCGCGCCTTTCGTCTGGCGATCGCCGAG
CTTTCCGAGAATTTGCGTCTGGCGCAGCTGCTCAGCCAGATCCTCGACCAGTCGGAACGGGCGCTCCATCTCGGCTTCAA
GTCGCGCGATTTCATGCCGCTGATCATCGAACAGCAGAAGCAATTGCTGCAGGCCTGCGAAAAGAGCGACGTTCCCGGCA
TCGTGAAACTCGCCCGCGCACAGTGCCTTGCCCTCAAGCATCAGCTGGTCGGAGCTCTGCTTGGCGGGGCCAAGCTGCGG
GACGTGAACCTTCAGGACTTCGTCTGA

Upstream 100 bases:

>100_bases
GTCGGCGGATAGAGGCATGCCACAGCTCCTGACTGAGATGCTCAGGGAAAATACCTAAGATGGCCAGTGCTCGTCAATGC
CGGTGCGAAGCGAGAGAAGC

Downstream 100 bases:

>100_bases
AGCAGTTCCGGGGAAAGTGAGTAGCGGTTTCCCCGGGAAAAGCGCATGGCGCTTTCCCTTGGGGATTGCTTCAAAACAAA
AGGGCCCTGTCGAGCCGGGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MKPTKTTPSKSVTPPGGTAALSTADLLRSEQAYEQLKSDIVACVLSPGEALTEKQIEARYGIKKATIRSALARLMQEGLV
RSEPRRGYVITTLTLRDVNEIFDVRSLVEPEVFRVATTGITERGLDEIRLAARKVLKPETLRSPVAFLAADRAFRLAIAE
LSENLRLAQLLSQILDQSERALHLGFKSRDFMPLIIEQQKQLLQACEKSDVPGIVKLARAQCLALKHQLVGALLGGAKLR
DVNLQDFV

Sequences:

>Translated_248_residues
MKPTKTTPSKSVTPPGGTAALSTADLLRSEQAYEQLKSDIVACVLSPGEALTEKQIEARYGIKKATIRSALARLMQEGLV
RSEPRRGYVITTLTLRDVNEIFDVRSLVEPEVFRVATTGITERGLDEIRLAARKVLKPETLRSPVAFLAADRAFRLAIAE
LSENLRLAQLLSQILDQSERALHLGFKSRDFMPLIIEQQKQLLQACEKSDVPGIVKLARAQCLALKHQLVGALLGGAKLR
DVNLQDFV
>Mature_248_residues
MKPTKTTPSKSVTPPGGTAALSTADLLRSEQAYEQLKSDIVACVLSPGEALTEKQIEARYGIKKATIRSALARLMQEGLV
RSEPRRGYVITTLTLRDVNEIFDVRSLVEPEVFRVATTGITERGLDEIRLAARKVLKPETLRSPVAFLAADRAFRLAIAE
LSENLRLAQLLSQILDQSERALHLGFKSRDFMPLIIEQQKQLLQACEKSDVPGIVKLARAQCLALKHQLVGALLGGAKLR
DVNLQDFV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=94, Percent_Identity=31.9148936170213, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27339; Mature: 27339

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPTKTTPSKSVTPPGGTAALSTADLLRSEQAYEQLKSDIVACVLSPGEALTEKQIEARY
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GIKKATIRSALARLMQEGLVRSEPRRGYVITTLTLRDVNEIFDVRSLVEPEVFRVATTGI
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHCCCHHHHHHHCCC
TERGLDEIRLAARKVLKPETLRSPVAFLAADRAFRLAIAELSENLRLAQLLSQILDQSER
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHH
ALHLGFKSRDFMPLIIEQQKQLLQACEKSDVPGIVKLARAQCLALKHQLVGALLGGAKLR
EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE
DVNLQDFV
CCCHHHCC
>Mature Secondary Structure
MKPTKTTPSKSVTPPGGTAALSTADLLRSEQAYEQLKSDIVACVLSPGEALTEKQIEARY
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GIKKATIRSALARLMQEGLVRSEPRRGYVITTLTLRDVNEIFDVRSLVEPEVFRVATTGI
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHCCCHHHHHHHCCC
TERGLDEIRLAARKVLKPETLRSPVAFLAADRAFRLAIAELSENLRLAQLLSQILDQSER
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHH
ALHLGFKSRDFMPLIIEQQKQLLQACEKSDVPGIVKLARAQCLALKHQLVGALLGGAKLR
EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE
DVNLQDFV
CCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]