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The map label for this gene is ybcK [H]

Identifier: 13473917

GI number: 13473917

Start: 3705162

End: 3706898

Strand: Direct

Name: ybcK [H]

Synonym: mlr4668

Alternate gene names: 13473917

Gene position: 3705162-3706898 (Clockwise)

Preceding gene: 13473915

Following gene: 13473918

Centisome position: 52.66

GC content: 54.0

Gene sequence:

>1737_bases
ATGTCGACCGATATCCAGCTGAAAGGCGACAGTTTGCGAAGGCAAACGGAGCGGTCAAAGCAGTATGCCGACGATCACGA
TCTTCAGCTAGTCGAGGACTTCAGGCTCGAGGACATAGGGGTCTCTGCGTTCAAGGGCGACAACCTCTCAACCGGCGAGC
TTGGCAAGTTTCTCGAAGCGGTGAAGGCCGGACGAATTCCGAAGGGCTCGTACCTATTGGTTGAGTCGTTCGACCGCCTT
TCACGTCAAAAGCTTAGTGCCGCAGTCCCTCTGTTTTTTGACATTACGTCGAACGGGATCAACCTAGTCACGCTATCAGA
CAATCAGCTCTATAAGGCTGGAGAAGCCGAATTCGCGCAGTTGATCATCTCGATTGCCATGATGGCACGTGCGAACGAAG
AGTCAGAAATCAAAAGCCAGCGGTTGTCTGCAGCATGGGACGCTAAGCGAAGGGCTATCGACGACAAAAAACTTACTGGA
CTGTGCCCAGCTTGGCTGGAGCTATCTGACGACCGGAAAAACTTTGGTGTGTTGGAGGATCGTGCACAGATCGTCAGACG
GATATTCGAGGATAGCGCGAGCGGGCAAGGGTCATTCGTCATCACGCGCCGACTGAACGACCTAGGCACACACGCTTTTG
GCAGGTCGAACGGTTGGGTGCAGTCCTATGTCACCAAGATTCTTCAGACCCGTGCGGTTCTCGGCGAGTTTCAGCCTCAC
ACCAAACAGAATGGAAAGCGAATTCCATTTGGGGATCCAATTCCCGGCTACTACCCGAAAATCGTCGATGAAGAACTGTT
TCTACGAGCGCAATTCGCCAGAGGTAAACGCCGGATAGAGGGCGGAGGGCGTAAGGGGGAAGCGCTGCGCAACCTATTCA
CCCACCTGGCTAAGTGTGGGTACTGCGGCTCCCCTATGCATTTTCTCAACAAGGGATTTGGGCCGGGCGGCGGAACATAT
CTGAAGTGCAGTCAGGCACTACGTGGACTGGATTGCGTATCGACCCCATGGCGCTACCAAGATTTTGAAAGATCGTTCTT
TCTGTACGTCAAGGAGATCGATCTAGGTGAAATGCTTGCGGCATCGGCCACGAAATCGGATGCGATCGCCTTGGACGATC
GACTGACTTCGCTGAAGGAGAAGCGTAATCAGTTAGAGGTTCAACGGGAGCGATCCTACGCTCTTATAAATCAGGCGATT
TCAATCGATTTCGTGTCGGCGAAACTGAAGGAATGCGAAAGCGATCTAGCTGGAGTTGACGTGCAGATCTCCGAAGTCGA
GCTACAGCTGTCTGCAATCCGCGAACAGCAGTCGATTTCGCCTGACGAACTGCACCGTTTGATTGACCAGCTTCAGGTGA
CGGAAGGTCCCGACGCGTTCGCGCAAAGGACAATGCTTGCCGGCCGCTTGCGCGAAATCGTCAGCGACCTGCGATTAGAT
GTTGAAGGCTCCAAACCCCGGTTGAAGAAGGCGGAAGCGCTCTTCGATCAGGCAGGGACCGATCCGACAGAGCGCCAGCG
CATTCTCGAAGTGATTGAACGAACCAACCTTGAGGCAAAGCGATATAACCGCAGTTTCTCGGTCGTTCTTGCCGACGGCG
TTTCCCGTAGAATCGTGCTGAATAATGAAGACCCAACGGACTTCGTCGCTGAGGTCACCGTGGATGCCGCAGGCAACCCG
GCTGTCAGCGAAGGTGGCACTGATCTGCAAACGCTATTCGAGCTGCCATCCGAGTAA

Upstream 100 bases:

>100_bases
AATTAGGACATGGTGGTTGAAACTTAACGTCATTGTGGGATATTAATTCTCCGATCCGGAGGTTTCCCTGACAAAGCCGC
TCGCCTATTCCTACGTCCGA

Downstream 100 bases:

>100_bases
TAGGCGTCGGACCGCTGCATCGTGGGTGGAAACCTGGCTTAGGCTATGAATGATAAGGAGGTTGGGCGAGGGCCTTTTCG
CCGATCTCTGCCAGGATGTT

Product: site-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 578; Mature: 577

Protein sequence:

>578_residues
MSTDIQLKGDSLRRQTERSKQYADDHDLQLVEDFRLEDIGVSAFKGDNLSTGELGKFLEAVKAGRIPKGSYLLVESFDRL
SRQKLSAAVPLFFDITSNGINLVTLSDNQLYKAGEAEFAQLIISIAMMARANEESEIKSQRLSAAWDAKRRAIDDKKLTG
LCPAWLELSDDRKNFGVLEDRAQIVRRIFEDSASGQGSFVITRRLNDLGTHAFGRSNGWVQSYVTKILQTRAVLGEFQPH
TKQNGKRIPFGDPIPGYYPKIVDEELFLRAQFARGKRRIEGGGRKGEALRNLFTHLAKCGYCGSPMHFLNKGFGPGGGTY
LKCSQALRGLDCVSTPWRYQDFERSFFLYVKEIDLGEMLAASATKSDAIALDDRLTSLKEKRNQLEVQRERSYALINQAI
SIDFVSAKLKECESDLAGVDVQISEVELQLSAIREQQSISPDELHRLIDQLQVTEGPDAFAQRTMLAGRLREIVSDLRLD
VEGSKPRLKKAEALFDQAGTDPTERQRILEVIERTNLEAKRYNRSFSVVLADGVSRRIVLNNEDPTDFVAEVTVDAAGNP
AVSEGGTDLQTLFELPSE

Sequences:

>Translated_578_residues
MSTDIQLKGDSLRRQTERSKQYADDHDLQLVEDFRLEDIGVSAFKGDNLSTGELGKFLEAVKAGRIPKGSYLLVESFDRL
SRQKLSAAVPLFFDITSNGINLVTLSDNQLYKAGEAEFAQLIISIAMMARANEESEIKSQRLSAAWDAKRRAIDDKKLTG
LCPAWLELSDDRKNFGVLEDRAQIVRRIFEDSASGQGSFVITRRLNDLGTHAFGRSNGWVQSYVTKILQTRAVLGEFQPH
TKQNGKRIPFGDPIPGYYPKIVDEELFLRAQFARGKRRIEGGGRKGEALRNLFTHLAKCGYCGSPMHFLNKGFGPGGGTY
LKCSQALRGLDCVSTPWRYQDFERSFFLYVKEIDLGEMLAASATKSDAIALDDRLTSLKEKRNQLEVQRERSYALINQAI
SIDFVSAKLKECESDLAGVDVQISEVELQLSAIREQQSISPDELHRLIDQLQVTEGPDAFAQRTMLAGRLREIVSDLRLD
VEGSKPRLKKAEALFDQAGTDPTERQRILEVIERTNLEAKRYNRSFSVVLADGVSRRIVLNNEDPTDFVAEVTVDAAGNP
AVSEGGTDLQTLFELPSE
>Mature_577_residues
STDIQLKGDSLRRQTERSKQYADDHDLQLVEDFRLEDIGVSAFKGDNLSTGELGKFLEAVKAGRIPKGSYLLVESFDRLS
RQKLSAAVPLFFDITSNGINLVTLSDNQLYKAGEAEFAQLIISIAMMARANEESEIKSQRLSAAWDAKRRAIDDKKLTGL
CPAWLELSDDRKNFGVLEDRAQIVRRIFEDSASGQGSFVITRRLNDLGTHAFGRSNGWVQSYVTKILQTRAVLGEFQPHT
KQNGKRIPFGDPIPGYYPKIVDEELFLRAQFARGKRRIEGGGRKGEALRNLFTHLAKCGYCGSPMHFLNKGFGPGGGTYL
KCSQALRGLDCVSTPWRYQDFERSFFLYVKEIDLGEMLAASATKSDAIALDDRLTSLKEKRNQLEVQRERSYALINQAIS
IDFVSAKLKECESDLAGVDVQISEVELQLSAIREQQSISPDELHRLIDQLQVTEGPDAFAQRTMLAGRLREIVSDLRLDV
EGSKPRLKKAEALFDQAGTDPTERQRILEVIERTNLEAKRYNRSFSVVLADGVSRRIVLNNEDPTDFVAEVTVDAAGNPA
VSEGGTDLQTLFELPSE

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

Organism=Escherichia coli, GI1786756, Length=305, Percent_Identity=35.4098360655738, Blast_Score=174, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 64587; Mature: 64456

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS00697 DNA_LIGASE_A1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDIQLKGDSLRRQTERSKQYADDHDLQLVEDFRLEDIGVSAFKGDNLSTGELGKFLEA
CCCCEEECCHHHHHHHHHHHHCCCCCCHHHHHHCCHHHCCCEEECCCCCCHHHHHHHHHH
VKAGRIPKGSYLLVESFDRLSRQKLSAAVPLFFDITSNGINLVTLSDNQLYKAGEAEFAQ
HHHCCCCCCCEEHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEECCCCCCCCCHHHHHH
LIISIAMMARANEESEIKSQRLSAAWDAKRRAIDDKKLTGLCPAWLELSDDRKNFGVLED
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHCCCCCCCCCCCHHH
RAQIVRRIFEDSASGQGSFVITRRLNDLGTHAFGRSNGWVQSYVTKILQTRAVLGEFQPH
HHHHHHHHHHCCCCCCCCEEEEECHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
TKQNGKRIPFGDPIPGYYPKIVDEELFLRAQFARGKRRIEGGGRKGEALRNLFTHLAKCG
CCCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHCC
YCGSPMHFLNKGFGPGGGTYLKCSQALRGLDCVSTPWRYQDFERSFFLYVKEIDLGEMLA
CCCCCHHHHHCCCCCCCCCCEEHHHHHCCCCCCCCCCCCHHHCCEEEEEEEECCHHHHHH
ASATKSDAIALDDRLTSLKEKRNQLEVQRERSYALINQAISIDFVSAKLKECESDLAGVD
HCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VQISEVELQLSAIREQQSISPDELHRLIDQLQVTEGPDAFAQRTMLAGRLREIVSDLRLD
EEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEC
VEGSKPRLKKAEALFDQAGTDPTERQRILEVIERTNLEAKRYNRSFSVVLADGVSRRIVL
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCCCEEEEEECCCCEEEEE
NNEDPTDFVAEVTVDAAGNPAVSEGGTDLQTLFELPSE
CCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHCCCCC
>Mature Secondary Structure 
STDIQLKGDSLRRQTERSKQYADDHDLQLVEDFRLEDIGVSAFKGDNLSTGELGKFLEA
CCCEEECCHHHHHHHHHHHHCCCCCCHHHHHHCCHHHCCCEEECCCCCCHHHHHHHHHH
VKAGRIPKGSYLLVESFDRLSRQKLSAAVPLFFDITSNGINLVTLSDNQLYKAGEAEFAQ
HHHCCCCCCCEEHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEECCCCCCCCCHHHHHH
LIISIAMMARANEESEIKSQRLSAAWDAKRRAIDDKKLTGLCPAWLELSDDRKNFGVLED
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHCCCCCCCCCCCHHH
RAQIVRRIFEDSASGQGSFVITRRLNDLGTHAFGRSNGWVQSYVTKILQTRAVLGEFQPH
HHHHHHHHHHCCCCCCCCEEEEECHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
TKQNGKRIPFGDPIPGYYPKIVDEELFLRAQFARGKRRIEGGGRKGEALRNLFTHLAKCG
CCCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHCC
YCGSPMHFLNKGFGPGGGTYLKCSQALRGLDCVSTPWRYQDFERSFFLYVKEIDLGEMLA
CCCCCHHHHHCCCCCCCCCCEEHHHHHCCCCCCCCCCCCHHHCCEEEEEEEECCHHHHHH
ASATKSDAIALDDRLTSLKEKRNQLEVQRERSYALINQAISIDFVSAKLKECESDLAGVD
HCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VQISEVELQLSAIREQQSISPDELHRLIDQLQVTEGPDAFAQRTMLAGRLREIVSDLRLD
EEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEC
VEGSKPRLKKAEALFDQAGTDPTERQRILEVIERTNLEAKRYNRSFSVVLADGVSRRIVL
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCCCEEEEEECCCCEEEEE
NNEDPTDFVAEVTVDAAGNPAVSEGGTDLQTLFELPSE
CCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]