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The map label for this gene is ytbD [H]

Identifier: 13473472

GI number: 13473472

Start: 3263985

End: 3265178

Strand: Direct

Name: ytbD [H]

Synonym: mlr4084

Alternate gene names: 13473472

Gene position: 3263985-3265178 (Clockwise)

Preceding gene: 13473470

Following gene: 13473473

Centisome position: 46.39

GC content: 68.93

Gene sequence:

>1194_bases
ATGCCTATTGCTCTCTACGCCCTCGCCGCCGGTGCCTTTGGCATTGGCGTCACCGAATTCGTCATCATGGGTCTGCTGAT
CGATGTCAGCAAGGACCTCGGCGTCTCGATCTCGGCCGCCGGCCAGCTCATTTCGGGCTATGCGCTGGGCGTCGTCATCG
GCGCGCCGCTGCTCACCATCGCCACCGGCAACTGGCCGCGCAAGACCGTGCTGCTGGCGCTGATGGCGATCTTCACGCTG
GGCAATCTCGCCTGTGCGCTGGCGCCCGACTATTGGGCCCTGATGGGCGCCCGGATCATCACCGCCTTTGCCCATGGCAC
GTTCTTCGGCGTCGGCTCTGTCGTCGCCACCGGCCTGGTCGCGCCCAACAAGAAGGCGTCGGCGATCGCGCTGATGTTCA
CCGGGCTCACCATCGCCAACATCCTCGGCGTGCCCTTCGGCACCTGGCTCGGCCAGGCCTTCGGCTGGCGCGCGACCTTC
TGGGCGGTGACCGCGGTCGGCCTCGCGGCCTTCGCCGTCATCCTGGCCCTGGTGCCGCGCAGCCAGGTCGCGCCCGAGAA
GAGCGACCTGCGCGCCGATCTCGCCGTGCTGCGCCGCACGCCGGTCCTGCTCGGCCTTGCTACCACCGTGCTTGGCTATG
CCGGTGTCTTCGCCGTCTTCACCTACATCGCTCCGCTGTTGACCGAGATCAGCGGCTTCAAGGAAGCCGCCGTGTCGCCG
ATCCTGCTCGTCTTCGGCGGCGGCCTCATCGCCGGCAATCTCGCCGGCGGCAAGGTCGCCGACCGTTGGCTGGTGCCGGC
GGTGCTGGGCAGCCTCGTGGTGCTGGCCCTGGTGCTGGCGACCATGAGCTTCGCCATCCACAGCCAGGTACTGGCCGTGA
TCTATGTCGGGCTGCTCGGCGCCGCCGCCTTCGCCACCGTGGCGCCGTTGCAGATGTGGGTGCTGGACAAGGCGCAAGGC
GCCGGCCAGAGCCTCGCCTCGTCCTTCAACATCGCCGCCTTCAATCTCGGCAATGCCGCTGGCGCCTGGCTCGGCGGCGC
GGTCATCGCCCATGGCCTTGGGCTGGGTTCCCTCACCTGGGTCGCCGCCTTGCTGCCGGTCGCGGCACTCGCCGTGGCCG
GGCTGGCCCTGCGCCTCGACAGACATGAAGAGCGGCTGATCCCGGCTGCTGCCGGCACCGCCTGCATGAAGTGA

Upstream 100 bases:

>100_bases
TGCCCAACACAAGTCTGGTTCACAGTGCATGGCGACACGATCTTTCGGGCCGGAGCGCGGTTTGGACAAGGCGCTCGTCG
TTGCCAAAGTGGGAACCGCC

Downstream 100 bases:

>100_bases
TGGCAGCACCGATATCGACCGTCGACAGACGCCCCGAAACCAGACCCGAGAGGAGAACCCTATGACGCTTCCGATCCGCC
GCACCACCGTTGCCCTGCTG

Product: transmembrane efflux protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MPIALYALAAGAFGIGVTEFVIMGLLIDVSKDLGVSISAAGQLISGYALGVVIGAPLLTIATGNWPRKTVLLALMAIFTL
GNLACALAPDYWALMGARIITAFAHGTFFGVGSVVATGLVAPNKKASAIALMFTGLTIANILGVPFGTWLGQAFGWRATF
WAVTAVGLAAFAVILALVPRSQVAPEKSDLRADLAVLRRTPVLLGLATTVLGYAGVFAVFTYIAPLLTEISGFKEAAVSP
ILLVFGGGLIAGNLAGGKVADRWLVPAVLGSLVVLALVLATMSFAIHSQVLAVIYVGLLGAAAFATVAPLQMWVLDKAQG
AGQSLASSFNIAAFNLGNAAGAWLGGAVIAHGLGLGSLTWVAALLPVAALAVAGLALRLDRHEERLIPAAAGTACMK

Sequences:

>Translated_397_residues
MPIALYALAAGAFGIGVTEFVIMGLLIDVSKDLGVSISAAGQLISGYALGVVIGAPLLTIATGNWPRKTVLLALMAIFTL
GNLACALAPDYWALMGARIITAFAHGTFFGVGSVVATGLVAPNKKASAIALMFTGLTIANILGVPFGTWLGQAFGWRATF
WAVTAVGLAAFAVILALVPRSQVAPEKSDLRADLAVLRRTPVLLGLATTVLGYAGVFAVFTYIAPLLTEISGFKEAAVSP
ILLVFGGGLIAGNLAGGKVADRWLVPAVLGSLVVLALVLATMSFAIHSQVLAVIYVGLLGAAAFATVAPLQMWVLDKAQG
AGQSLASSFNIAAFNLGNAAGAWLGGAVIAHGLGLGSLTWVAALLPVAALAVAGLALRLDRHEERLIPAAAGTACMK
>Mature_396_residues
PIALYALAAGAFGIGVTEFVIMGLLIDVSKDLGVSISAAGQLISGYALGVVIGAPLLTIATGNWPRKTVLLALMAIFTLG
NLACALAPDYWALMGARIITAFAHGTFFGVGSVVATGLVAPNKKASAIALMFTGLTIANILGVPFGTWLGQAFGWRATFW
AVTAVGLAAFAVILALVPRSQVAPEKSDLRADLAVLRRTPVLLGLATTVLGYAGVFAVFTYIAPLLTEISGFKEAAVSPI
LLVFGGGLIAGNLAGGKVADRWLVPAVLGSLVVLALVLATMSFAIHSQVLAVIYVGLLGAAAFATVAPLQMWVLDKAQGA
GQSLASSFNIAAFNLGNAAGAWLGGAVIAHGLGLGSLTWVAALLPVAALAVAGLALRLDRHEERLIPAAAGTACMK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=391, Percent_Identity=46.2915601023018, Blast_Score=264, Evalue=9e-72,
Organism=Escherichia coli, GI1786595, Length=394, Percent_Identity=37.5634517766497, Blast_Score=236, Evalue=2e-63,
Organism=Escherichia coli, GI1787808, Length=229, Percent_Identity=31.0043668122271, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI145693198, Length=347, Percent_Identity=26.2247838616715, Blast_Score=98, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40323; Mature: 40192

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIALYALAAGAFGIGVTEFVIMGLLIDVSKDLGVSISAAGQLISGYALGVVIGAPLLTI
CCEEHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHEE
ATGNWPRKTVLLALMAIFTLGNLACALAPDYWALMGARIITAFAHGTFFGVGSVVATGLV
ECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
APNKKASAIALMFTGLTIANILGVPFGTWLGQAFGWRATFWAVTAVGLAAFAVILALVPR
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
SQVAPEKSDLRADLAVLRRTPVLLGLATTVLGYAGVFAVFTYIAPLLTEISGFKEAAVSP
CCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
ILLVFGGGLIAGNLAGGKVADRWLVPAVLGSLVVLALVLATMSFAIHSQVLAVIYVGLLG
HHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAFATVAPLQMWVLDKAQGAGQSLASSFNIAAFNLGNAAGAWLGGAVIAHGLGLGSLTW
HHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHH
VAALLPVAALAVAGLALRLDRHEERLIPAAAGTACMK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHCCC
>Mature Secondary Structure 
PIALYALAAGAFGIGVTEFVIMGLLIDVSKDLGVSISAAGQLISGYALGVVIGAPLLTI
CEEHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHEE
ATGNWPRKTVLLALMAIFTLGNLACALAPDYWALMGARIITAFAHGTFFGVGSVVATGLV
ECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
APNKKASAIALMFTGLTIANILGVPFGTWLGQAFGWRATFWAVTAVGLAAFAVILALVPR
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
SQVAPEKSDLRADLAVLRRTPVLLGLATTVLGYAGVFAVFTYIAPLLTEISGFKEAAVSP
CCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
ILLVFGGGLIAGNLAGGKVADRWLVPAVLGSLVVLALVLATMSFAIHSQVLAVIYVGLLG
HHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAFATVAPLQMWVLDKAQGAGQSLASSFNIAAFNLGNAAGAWLGGAVIAHGLGLGSLTW
HHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHH
VAALLPVAALAVAGLALRLDRHEERLIPAAAGTACMK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]