Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 13473468

GI number: 13473468

Start: 3260864

End: 3261526

Strand: Direct

Name: yggS [C]

Synonym: mlr4078

Alternate gene names: 13473468

Gene position: 3260864-3261526 (Clockwise)

Preceding gene: 13473464

Following gene: 13473469

Centisome position: 46.34

GC content: 65.61

Gene sequence:

>663_bases
ATGGGTGACACCGTTCAGCAGTTTTTCGCGGTCAAGGCGAAGATCGCCGCCGCCGAGCGGGAAGCCCGCCGCGAGGCCGG
CGCGGTGACGCTGGTGGCCGTCTCCAAGACCTTTGACGCCGCCGACATCCGGCCAGTGATCGAGGCCGGCCAACGGGTCT
TCGGCGAGAACCGCGTGCAGGAAGCGCAAGGCAAATGGCCTGATCTGAAGCAGGCCTTCGCCGATATCGAATTGCATCTC
ATCGGTCCGCTGCAGTCAAACAAGGCCAAGGAGGCGGTGGCGCTGTTCGACGTCATCGAGACGGTCGACCGCGAGAAAAT
CGCCGCCGAACTCGCCAAGGAAATCGCCAGGCAAGGCCGCGCGCCAAAACTCTATGTCCAGGTCAACACTGGCTCCGAGC
CGCAGAAGGCCGGCATCGAGCCGCGCGCCGCGATCGCCTTCGTCACCCGCTGCCGCGATGTCCACGGCCTCGCCATCGAA
GGGCTTATGTGCATCCCGCCGGCCGACGAGAACCCCGGCCCGCATTTCGCCCTGCTGGAAAAGCTTGCCCGCGAGGCCGG
CGTCGAAAAACTATCGATGGGCATGTCCGGCGACTACGAGACGGCCATCGCCTTCGGCGCCACCAGCGTCAGGGTAGGCT
CGGCGATCTTCGGCAGCCGCTGA

Upstream 100 bases:

>100_bases
AAGGAATGTGGTCCGGGTGTTCACCATGGTTTGACAGACCCGTCAACCATATGGGCATCGCAGCGGCTAAAAACGCGGGT
CAAAACAGCGGGATTTGCAC

Downstream 100 bases:

>100_bases
TACGCACGCCTTTGGGCCAGTTCGGCAAGCCGGTTGCGCCACGGCTGGAAACGAAACGTTCCGTTCCTATTTGTTTTGTG
TCATCACACATTTCTCCTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MGDTVQQFFAVKAKIAAAEREARREAGAVTLVAVSKTFDAADIRPVIEAGQRVFGENRVQEAQGKWPDLKQAFADIELHL
IGPLQSNKAKEAVALFDVIETVDREKIAAELAKEIARQGRAPKLYVQVNTGSEPQKAGIEPRAAIAFVTRCRDVHGLAIE
GLMCIPPADENPGPHFALLEKLAREAGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGSR

Sequences:

>Translated_220_residues
MGDTVQQFFAVKAKIAAAEREARREAGAVTLVAVSKTFDAADIRPVIEAGQRVFGENRVQEAQGKWPDLKQAFADIELHL
IGPLQSNKAKEAVALFDVIETVDREKIAAELAKEIARQGRAPKLYVQVNTGSEPQKAGIEPRAAIAFVTRCRDVHGLAIE
GLMCIPPADENPGPHFALLEKLAREAGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGSR
>Mature_219_residues
GDTVQQFFAVKAKIAAAEREARREAGAVTLVAVSKTFDAADIRPVIEAGQRVFGENRVQEAQGKWPDLKQAFADIELHLI
GPLQSNKAKEAVALFDVIETVDREKIAAELAKEIARQGRAPKLYVQVNTGSEPQKAGIEPRAAIAFVTRCRDVHGLAIEG
LMCIPPADENPGPHFALLEKLAREAGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGSR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=212, Percent_Identity=38.2075471698113, Blast_Score=105, Evalue=3e-23,
Organism=Escherichia coli, GI1789321, Length=237, Percent_Identity=38.8185654008439, Blast_Score=130, Evalue=9e-32,
Organism=Caenorhabditis elegans, GI17533025, Length=212, Percent_Identity=40.0943396226415, Blast_Score=105, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6319435, Length=239, Percent_Identity=33.0543933054393, Blast_Score=94, Evalue=2e-20,
Organism=Drosophila melanogaster, GI45550861, Length=223, Percent_Identity=35.8744394618834, Blast_Score=112, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 23640; Mature: 23509

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDTVQQFFAVKAKIAAAEREARREAGAVTLVAVSKTFDAADIRPVIEAGQRVFGENRVQ
CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHH
EAQGKWPDLKQAFADIELHLIGPLQSNKAKEAVALFDVIETVDREKIAAELAKEIARQGR
HHCCCCCHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
APKLYVQVNTGSEPQKAGIEPRAAIAFVTRCRDVHGLAIEGLMCIPPADENPGPHFALLE
CCEEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHCCCEECCEEECCCCCCCCCCCHHHHH
KLAREAGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGSR
HHHHHHCHHHHHCCCCCCCHHHEEECCHHHHHCCHHHCCC
>Mature Secondary Structure 
GDTVQQFFAVKAKIAAAEREARREAGAVTLVAVSKTFDAADIRPVIEAGQRVFGENRVQ
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHH
EAQGKWPDLKQAFADIELHLIGPLQSNKAKEAVALFDVIETVDREKIAAELAKEIARQGR
HHCCCCCHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
APKLYVQVNTGSEPQKAGIEPRAAIAFVTRCRDVHGLAIEGLMCIPPADENPGPHFALLE
CCEEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHCCCEECCEEECCCCCCCCCCCHHHHH
KLAREAGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGSR
HHHHHHCHHHHHCCCCCCCHHHEEECCHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]