Click here to switch to the map view.

The map label for this gene is omp2b [H]

Identifier: 13473431

GI number: 13473431

Start: 3218342

End: 3219511

Strand: Reverse

Name: omp2b [H]

Synonym: mll4029

Alternate gene names: 13473431

Gene position: 3219511-3218342 (Counterclockwise)

Preceding gene: 13473432

Following gene: 13473427

Centisome position: 45.76

GC content: 59.06

Gene sequence:

>1170_bases
ATGAACATTAAGAGCCTTCTTCTCGGCTCCGCTGCGGCCCTGATCGCAGTTTCCGGTGCGCGCGCCGCCGACGCCGTCGT
CGTCGCTGAGCCGGAACCCGCTGAATACGTCAAGATCTGCGACGTCTACGGCGCTGGCTACTTCTACATCCCCGGCACCG
AAACCTGCCTGCGTATCGGCGGCTATGTCCGCTATGACATCGCCGGTGGCGATGTCGGCTCGTTCGACGGTTCAAAAGCG
TTCGACGTGCGGTCCGGCAAGGAACAGTCCAACTGGCACAAGAACGCACGCCTTTCGCTGAGGACCTGGACCGGTCAAGA
GACTGAGCTCGGCACCTTGAAGACCTATACCGAGACCCGCTTCAACTTCGGCAACCACAACGACTACGCCACACGCACCA
ATGGGAACTTTAATGTCGCGCACGACAAGGGTGTCTCGCTGAACTTCGCGTGGATCCAGCTTGGAGGTCTCCGCGTCGGT
AAGGATGAATCGGCCTTCGATACGTTCATCGGCTACGCCGGCAGCGTCATCAACGACACGATCGTTCCCTACGGCGACTT
CGACACCAACGTCGTCCAGTACTACTTCGACGCCGGCAACGGCTTCTCGGCGGTGGTCTCGTTGGAAGAAGGCTCCGGCA
GAAAGGGCACGATTGACAGCTATGTTCCGCATGTCGTCGGCGGCGTGAAGTACACGCAGGGCTGGGGCGCCATCACCGGC
GTCGTCGCTTATGACAGCAACTACGAATCGGTGGCCGGCAAGGTGCGCTTGGACGTGAACGTCTCCAGCGCGCTGTCACT
TTTCGTCATTGGCGGTTACGGCTCTGACGGCAAGCTCAACGACGACTCGACCAACTTTATCGACGCTCACGGTCGCGGGT
TCTACAAGCAGTGGGGTGGCAATTGGGCATTCTGGGCCGGCGGCACCTACAAATTCAACGAGAAGGCCTCGTTCAACGTT
CAGGTGTCGGGTGACGAGCTCAAGAACTATGGCGTGGCGGCTAACGTTGCCTATGACATCGTTCCTGGCTTCACGGTTAC
GGCCGAAGTTGACTGGGATCACTATGGCAAGTTTGGTGAGATCACGACCGATCCATCCAATGTCAACTGGACCAACGCCG
ACAAGAAGAACAGCGTCGGCGGCATCCTCCGCTTCCAGCGCTCCTTCTAA

Upstream 100 bases:

>100_bases
GTGCGCATCTTTTTCGGTAGTGGGGATGGGGCAGGGAACGCTGTCCTTCAGCAAAGAATACCCAGACCCTTTTTTTAACA
CCCTTTCTGGAGGTCAGAAA

Downstream 100 bases:

>100_bases
CAGATTTCGGATCGTCGAAATCGGAACCCGGCGGGCAACCGCCGGGTTTTTTCATTTGCTAGTACAAGCTGCACTACTAT
GCGAGCGAGTCACGACTTAT

Product: porin Omp2b

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MNIKSLLLGSAAALIAVSGARAADAVVVAEPEPAEYVKICDVYGAGYFYIPGTETCLRIGGYVRYDIAGGDVGSFDGSKA
FDVRSGKEQSNWHKNARLSLRTWTGQETELGTLKTYTETRFNFGNHNDYATRTNGNFNVAHDKGVSLNFAWIQLGGLRVG
KDESAFDTFIGYAGSVINDTIVPYGDFDTNVVQYYFDAGNGFSAVVSLEEGSGRKGTIDSYVPHVVGGVKYTQGWGAITG
VVAYDSNYESVAGKVRLDVNVSSALSLFVIGGYGSDGKLNDDSTNFIDAHGRGFYKQWGGNWAFWAGGTYKFNEKASFNV
QVSGDELKNYGVAANVAYDIVPGFTVTAEVDWDHYGKFGEITTDPSNVNWTNADKKNSVGGILRFQRSF

Sequences:

>Translated_389_residues
MNIKSLLLGSAAALIAVSGARAADAVVVAEPEPAEYVKICDVYGAGYFYIPGTETCLRIGGYVRYDIAGGDVGSFDGSKA
FDVRSGKEQSNWHKNARLSLRTWTGQETELGTLKTYTETRFNFGNHNDYATRTNGNFNVAHDKGVSLNFAWIQLGGLRVG
KDESAFDTFIGYAGSVINDTIVPYGDFDTNVVQYYFDAGNGFSAVVSLEEGSGRKGTIDSYVPHVVGGVKYTQGWGAITG
VVAYDSNYESVAGKVRLDVNVSSALSLFVIGGYGSDGKLNDDSTNFIDAHGRGFYKQWGGNWAFWAGGTYKFNEKASFNV
QVSGDELKNYGVAANVAYDIVPGFTVTAEVDWDHYGKFGEITTDPSNVNWTNADKKNSVGGILRFQRSF
>Mature_389_residues
MNIKSLLLGSAAALIAVSGARAADAVVVAEPEPAEYVKICDVYGAGYFYIPGTETCLRIGGYVRYDIAGGDVGSFDGSKA
FDVRSGKEQSNWHKNARLSLRTWTGQETELGTLKTYTETRFNFGNHNDYATRTNGNFNVAHDKGVSLNFAWIQLGGLRVG
KDESAFDTFIGYAGSVINDTIVPYGDFDTNVVQYYFDAGNGFSAVVSLEEGSGRKGTIDSYVPHVVGGVKYTQGWGAITG
VVAYDSNYESVAGKVRLDVNVSSALSLFVIGGYGSDGKLNDDSTNFIDAHGRGFYKQWGGNWAFWAGGTYKFNEKASFNV
QVSGDELKNYGVAANVAYDIVPGFTVTAEVDWDHYGKFGEITTDPSNVNWTNADKKNSVGGILRFQRSF

Specific function: Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alphaproteobacteria porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003684 [H]

Pfam domain/function: PF02530 Porin_2 [H]

EC number: NA

Molecular weight: Translated: 42094; Mature: 42094

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKSLLLGSAAALIAVSGARAADAVVVAEPEPAEYVKICDVYGAGYFYIPGTETCLRIG
CCHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCEEEEEEEECCCEEEECCCHHHHHCC
GYVRYDIAGGDVGSFDGSKAFDVRSGKEQSNWHKNARLSLRTWTGQETELGTLKTYTETR
CEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEE
FNFGNHNDYATRTNGNFNVAHDKGVSLNFAWIQLGGLRVGKDESAFDTFIGYAGSVINDT
CCCCCCCCCEEECCCCEEEEECCCCEEEEEEEEECCEEECCCCHHHHHHHHHCCHHHCCC
IVPYGDFDTNVVQYYFDAGNGFSAVVSLEEGSGRKGTIDSYVPHVVGGVKYTQGWGAITG
CCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCEEECCCCCEEE
VVAYDSNYESVAGKVRLDVNVSSALSLFVIGGYGSDGKLNDDSTNFIDAHGRGFYKQWGG
EEEECCCCHHCCEEEEEEEEHHCEEEEEEEEEECCCCCCCCCCCCEEECCCCEEHHHHCC
NWAFWAGGTYKFNEKASFNVQVSGDELKNYGVAANVAYDIVPGFTVTAEVDWDHYGKFGE
CEEEECCCEEEECCCCEEEEEECCHHHHCCCEEEEEEEEECCCEEEEEEECHHHCCCCCC
ITTDPSNVNWTNADKKNSVGGILRFQRSF
EECCCCCCCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MNIKSLLLGSAAALIAVSGARAADAVVVAEPEPAEYVKICDVYGAGYFYIPGTETCLRIG
CCHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCEEEEEEEECCCEEEECCCHHHHHCC
GYVRYDIAGGDVGSFDGSKAFDVRSGKEQSNWHKNARLSLRTWTGQETELGTLKTYTETR
CEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEE
FNFGNHNDYATRTNGNFNVAHDKGVSLNFAWIQLGGLRVGKDESAFDTFIGYAGSVINDT
CCCCCCCCCEEECCCCEEEEECCCCEEEEEEEEECCEEECCCCHHHHHHHHHCCHHHCCC
IVPYGDFDTNVVQYYFDAGNGFSAVVSLEEGSGRKGTIDSYVPHVVGGVKYTQGWGAITG
CCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCEEECCCCCEEE
VVAYDSNYESVAGKVRLDVNVSSALSLFVIGGYGSDGKLNDDSTNFIDAHGRGFYKQWGG
EEEECCCCHHCCEEEEEEEEHHCEEEEEEEEEECCCCCCCCCCCCEEECCCCEEHHHHCC
NWAFWAGGTYKFNEKASFNVQVSGDELKNYGVAANVAYDIVPGFTVTAEVDWDHYGKFGE
CEEEECCCEEEECCCCEEEEEECCHHHHCCCEEEEEEEEECCCEEEEEEECHHHCCCCCC
ITTDPSNVNWTNADKKNSVGGILRFQRSF
EECCCCCCCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2509359 [H]