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The map label for this gene is ymdB [H]

Identifier: 13473375

GI number: 13473375

Start: 3162720

End: 3163544

Strand: Reverse

Name: ymdB [H]

Synonym: mll3953

Alternate gene names: 13473375

Gene position: 3163544-3162720 (Counterclockwise)

Preceding gene: 13473376

Following gene: 13473374

Centisome position: 44.96

GC content: 64.36

Gene sequence:

>825_bases
ATGAGACTTCTCTTCCTCGGTGACATGGTCGGAAAAACGGGACGCACGGCGGTGTGGGAACAACTGCCCGGCCTGATCTC
GGACTTCAAACTCGACTTCGTCATCGTCAATGGCGAGAATGCCGCCGGCGGCTTCGGGATCACAGAAGAAATCTTTCGCG
AGACGATCGCGGCCGGCGCCGATGTCGTCACCACCGGCAACCATGTCTGGGATCAGCGCGATGCGCTCGCCTTCGCGCCG
CGCGAAGAGCGCTTCCTGCGTCCGTCGAATTTCCCCAAGGGCACGCCCGGGCGCGGCTCCGGCGTCTACATCGCCAGGAG
CGGCGCGCGCGTGCTGGTCACAAACATCATGGGGCGGGTGTTCATGCATCCCGAGCTCGACGATCCGTTCCAGGCCGGCG
AGCGCGAGCTTGCCGCCTGCCCGCTCGGCGAGCAGGCGGATGCGGTGGTGATCGACTTCCATGCCGAGGCGACCTCGGAA
AAGATGTGCTTTGCGCATTTCGTCGACGGCCGCGCCAGCCTGGTGGTCGGCACCCACACCCACCAGCCGACGGCCGACCA
CCAGATCCTCAATGGCGGCACCGGCTATCTGTCGGATGCCGGCATGTGCGGCGACTACGATTCCTCGCTTGGCATGGACA
AGGAGGAACCGCTCAACCGGTTCCTGTCGAAAGTGCCGAAGGGGCGCTTCGAGGCTGCGACCGGCCCGGCGACCTTGTGC
GGGGTCGGTGTCAATATTTCCGATCGTACCGGACTGACCGAGAAGATCGCGCCGTTTCGTCGCGGGCCAAGGCTGGAAGA
AACGGCTCCATCCTTCTGGTCATGA

Upstream 100 bases:

>100_bases
GGGTTGCGCCGCTTCACGCCAAAATTGTAGATAATGGAGGCATGATCTTTTCGCGGATGTCATGCAGCTTTTGCTTCGCT
GACTTTCGGTGCGGGATCAT

Downstream 100 bases:

>100_bases
CATTGATATAGGCGCGCGCAGTACCTAATTGCCGACGACATCTGCTTCAGATCGTTAAAAGAGGGGACAACGACCTCCAT
GCAGCTTATCGAATTTCTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MRLLFLGDMVGKTGRTAVWEQLPGLISDFKLDFVIVNGENAAGGFGITEEIFRETIAAGADVVTTGNHVWDQRDALAFAP
REERFLRPSNFPKGTPGRGSGVYIARSGARVLVTNIMGRVFMHPELDDPFQAGERELAACPLGEQADAVVIDFHAEATSE
KMCFAHFVDGRASLVVGTHTHQPTADHQILNGGTGYLSDAGMCGDYDSSLGMDKEEPLNRFLSKVPKGRFEAATGPATLC
GVGVNISDRTGLTEKIAPFRRGPRLEETAPSFWS

Sequences:

>Translated_274_residues
MRLLFLGDMVGKTGRTAVWEQLPGLISDFKLDFVIVNGENAAGGFGITEEIFRETIAAGADVVTTGNHVWDQRDALAFAP
REERFLRPSNFPKGTPGRGSGVYIARSGARVLVTNIMGRVFMHPELDDPFQAGERELAACPLGEQADAVVIDFHAEATSE
KMCFAHFVDGRASLVVGTHTHQPTADHQILNGGTGYLSDAGMCGDYDSSLGMDKEEPLNRFLSKVPKGRFEAATGPATLC
GVGVNISDRTGLTEKIAPFRRGPRLEETAPSFWS
>Mature_274_residues
MRLLFLGDMVGKTGRTAVWEQLPGLISDFKLDFVIVNGENAAGGFGITEEIFRETIAAGADVVTTGNHVWDQRDALAFAP
REERFLRPSNFPKGTPGRGSGVYIARSGARVLVTNIMGRVFMHPELDDPFQAGERELAACPLGEQADAVVIDFHAEATSE
KMCFAHFVDGRASLVVGTHTHQPTADHQILNGGTGYLSDAGMCGDYDSSLGMDKEEPLNRFLSKVPKGRFEAATGPATLC
GVGVNISDRTGLTEKIAPFRRGPRLEETAPSFWS

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29602; Mature: 29602

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLFLGDMVGKTGRTAVWEQLPGLISDFKLDFVIVNGENAAGGFGITEEIFRETIAAGA
CEEEEEEHHHCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCC
DVVTTGNHVWDQRDALAFAPREERFLRPSNFPKGTPGRGSGVYIARSGARVLVTNIMGRV
CEEECCCCCCCCCCCEEECCCHHHCCCCCCCCCCCCCCCCCEEEEECCCEEHHHHHHHHE
FMHPELDDPFQAGERELAACPLGEQADAVVIDFHAEATSEKMCFAHFVDGRASLVVGTHT
EECCCCCCHHHHCCCCEEECCCCCCCCEEEEEEECCCCCCCEEEEEEECCCEEEEEECCC
HQPTADHQILNGGTGYLSDAGMCGDYDSSLGMDKEEPLNRFLSKVPKGRFEAATGPATLC
CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEE
GVGVNISDRTGLTEKIAPFRRGPRLEETAPSFWS
EECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MRLLFLGDMVGKTGRTAVWEQLPGLISDFKLDFVIVNGENAAGGFGITEEIFRETIAAGA
CEEEEEEHHHCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCC
DVVTTGNHVWDQRDALAFAPREERFLRPSNFPKGTPGRGSGVYIARSGARVLVTNIMGRV
CEEECCCCCCCCCCCEEECCCHHHCCCCCCCCCCCCCCCCCEEEEECCCEEHHHHHHHHE
FMHPELDDPFQAGERELAACPLGEQADAVVIDFHAEATSEKMCFAHFVDGRASLVVGTHT
EECCCCCCHHHHCCCCEEECCCCCCCCEEEEEEECCCCCCCEEEEEEECCCEEEEEECCC
HQPTADHQILNGGTGYLSDAGMCGDYDSSLGMDKEEPLNRFLSKVPKGRFEAATGPATLC
CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEE
GVGVNISDRTGLTEKIAPFRRGPRLEETAPSFWS
EECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]