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The map label for this gene is yebC [C]

Identifier: 13473370

GI number: 13473370

Start: 3159560

End: 3160309

Strand: Reverse

Name: yebC [C]

Synonym: mll3945

Alternate gene names: 13473370

Gene position: 3160309-3159560 (Counterclockwise)

Preceding gene: 13473371

Following gene: 13473369

Centisome position: 44.92

GC content: 63.47

Gene sequence:

>750_bases
ATGGCTGGCCATTCACAGTTCAAGAACATCATGCACCGCAAGGGCCGTCAGGACGCGGTGCGGTCGAAAATGTTTTCCAA
GCTGGCGCGCGAAATCACCGTGGCCGCCAAGAGCGGCACGCCCGACCCATCGATGAACCCACGCCTGCGGCTGGCGATCC
AGAACGCCAAGGCCGTGTCGATGCCGAAGGACAACATCCAGCGCGCCATCAACAAGGCGTCGATGGGCGATGCCGAGAAC
TACGAGGCCGTGCGCTATGAAGGTTATGGCCCAGGCGGCGTCGCCGTCATCGTCGAGGCGTTGACCGACAACCGCAACCG
CTCGGCGTCGAATGTCCGCGCCGCCTTCACCAAGGCCGGCGGCGCGATGGGCGAGACCGGTTCGGTGTCCTTCATGTGGG
ACCGTGTCGGCGAGATCTACTATCCGGCATCGGCCGGCAGCGCCGACAAGGTCATGGAAGCGGCGATTGAAGCCGGCGCC
GACGACGTCGAAAGTGACGAGGAAGGCCACACGATCTATTGCGCCTTCGAGAATCTCGGCGAGGTGTCGAAGGCACTGGA
AGCCGCGCTCGGCGAGGCGGAGTCGGTGAAGCTGATCTGGCGTCCGCAGAACAATGTTCCGGTCGACGAGGAGCGGGCAC
AGTCGCTGATGAAGCTGGTCGCCACGCTCGAGGATGACGACGACGTGCAAAGCGTATACGCCAACTTCGAAGTCGACGAC
GAGACCTTGGCCAAGCTCAGCGCGGCCTGA

Upstream 100 bases:

>100_bases
TGCACCTGGGACGCTCTGAAATTTTGAATTCGAGCATTTTGCAAGGGCGAGGTGATCCACCTGGCTGCGAGATGCTCTAG
CCGAACACGACAGGGGTGCC

Downstream 100 bases:

>100_bases
TCGGTTGGGATATGAGCAAAGCTCAATCCGATATGAGCGAGACGCCGTTGCCCGCCATCCGCATCACCTATTGCACGCAG
TGCCAGTGGCTGCTGCGTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MAGHSQFKNIMHRKGRQDAVRSKMFSKLAREITVAAKSGTPDPSMNPRLRLAIQNAKAVSMPKDNIQRAINKASMGDAEN
YEAVRYEGYGPGGVAVIVEALTDNRNRSASNVRAAFTKAGGAMGETGSVSFMWDRVGEIYYPASAGSADKVMEAAIEAGA
DDVESDEEGHTIYCAFENLGEVSKALEAALGEAESVKLIWRPQNNVPVDEERAQSLMKLVATLEDDDDVQSVYANFEVDD
ETLAKLSAA

Sequences:

>Translated_249_residues
MAGHSQFKNIMHRKGRQDAVRSKMFSKLAREITVAAKSGTPDPSMNPRLRLAIQNAKAVSMPKDNIQRAINKASMGDAEN
YEAVRYEGYGPGGVAVIVEALTDNRNRSASNVRAAFTKAGGAMGETGSVSFMWDRVGEIYYPASAGSADKVMEAAIEAGA
DDVESDEEGHTIYCAFENLGEVSKALEAALGEAESVKLIWRPQNNVPVDEERAQSLMKLVATLEDDDDVQSVYANFEVDD
ETLAKLSAA
>Mature_248_residues
AGHSQFKNIMHRKGRQDAVRSKMFSKLAREITVAAKSGTPDPSMNPRLRLAIQNAKAVSMPKDNIQRAINKASMGDAENY
EAVRYEGYGPGGVAVIVEALTDNRNRSASNVRAAFTKAGGAMGETGSVSFMWDRVGEIYYPASAGSADKVMEAAIEAGAD
DVESDEEGHTIYCAFENLGEVSKALEAALGEAESVKLIWRPQNNVPVDEERAQSLMKLVATLEDDDDVQSVYANFEVDDE
TLAKLSAA

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=246, Percent_Identity=31.7073170731707, Blast_Score=117, Evalue=1e-26,
Organism=Escherichia coli, GI1788171, Length=248, Percent_Identity=46.7741935483871, Blast_Score=220, Evalue=7e-59,
Organism=Escherichia coli, GI1788294, Length=233, Percent_Identity=39.9141630901288, Blast_Score=157, Evalue=5e-40,
Organism=Caenorhabditis elegans, GI17556100, Length=251, Percent_Identity=25.8964143426295, Blast_Score=74, Evalue=9e-14,
Organism=Saccharomyces cerevisiae, GI6321458, Length=263, Percent_Identity=34.9809885931559, Blast_Score=126, Evalue=4e-30,
Organism=Drosophila melanogaster, GI24583305, Length=248, Percent_Identity=29.4354838709677, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3945_RHILO (Q98F44)

Other databases:

- EMBL:   BA000012
- RefSeq:   NP_104937.1
- ProteinModelPortal:   Q98F44
- SMR:   Q98F44
- GeneID:   1227598
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mll3945
- NMPDR:   fig|266835.1.peg.3041
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- ProtClustDB:   PRK00110
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 26883; Mature: 26752

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHSQFKNIMHRKGRQDAVRSKMFSKLAREITVAAKSGTPDPSMNPRLRLAIQNAKAVS
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCEEEEEEECCCCCC
MPKDNIQRAINKASMGDAENYEAVRYEGYGPGGVAVIVEALTDNRNRSASNVRAAFTKAG
CCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCC
GAMGETGSVSFMWDRVGEIYYPASAGSADKVMEAAIEAGADDVESDEEGHTIYCAFENLG
CCCCCCCCEEEHHHCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHH
EVSKALEAALGEAESVKLIWRPQNNVPVDEERAQSLMKLVATLEDDDDVQSVYANFEVDD
HHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCH
ETLAKLSAA
HHHHHHCCC
>Mature Secondary Structure 
AGHSQFKNIMHRKGRQDAVRSKMFSKLAREITVAAKSGTPDPSMNPRLRLAIQNAKAVS
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCEEEEEEECCCCCC
MPKDNIQRAINKASMGDAENYEAVRYEGYGPGGVAVIVEALTDNRNRSASNVRAAFTKAG
CCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCC
GAMGETGSVSFMWDRVGEIYYPASAGSADKVMEAAIEAGADDVESDEEGHTIYCAFENLG
CCCCCCCCEEEHHHCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHH
EVSKALEAALGEAESVKLIWRPQNNVPVDEERAQSLMKLVATLEDDDDVQSVYANFEVDD
HHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCH
ETLAKLSAA
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968