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The map label for this gene is rpoE [H]

Identifier: 13473266

GI number: 13473266

Start: 3056157

End: 3056696

Strand: Direct

Name: rpoE [H]

Synonym: mlr3807

Alternate gene names: 13473266

Gene position: 3056157-3056696 (Clockwise)

Preceding gene: 13473265

Following gene: 13473267

Centisome position: 43.44

GC content: 67.22

Gene sequence:

>540_bases
TTGAGCGAGAGGGCCCTGGCAGAACGCTTCAACGAAGTGGTGCTGCCGCATCTCGGCGACGCGCTGGCGCTGGCCCGCTG
GCTGACCGGCAATGCCGCCGATGCCGAGGATGTGGTGCAGGACGCCTGCATCAAGGCGCATGCCGGCATATCAGGCTACG
CCGGCGGCAACGCCCGAGCTTGGTTGCTGACCATCGTTCGCAACACCTCCTATACCTGGATGGCGCGCAACCGGCCGCGC
GCCATGATGGCCGTCGGCGATCTCGGCGATCTCGACGACATGGCGGCGGCGCACGGCACCAGCATGCCCGACGAGGACGG
CCCGGAGGCGAGCCTGATCGCCAAAGCCGATACGGCGGCACTGGAGGCGGCGATCGCGGCCCTGCCGCAGCCATTTCGCG
AGACGCTGGTGCTACGCGATATCAACGGCCTCAGCTATCGCGAGATATCGGCCATGCTTGCCGTGCCGATCGGCACGGTG
ATGTCCAGGCTGGCCCGCGCCCGTGGCCTGCTTGCGACTGAATTGGGGAGAACGTCATGA

Upstream 100 bases:

>100_bases
GGCTCTGCCTGCTTCCGGGGGCTTTGCCCCTGCGAGCAGGGCAAGGTCGCCGTCGCATCTTGAGGCGGCACGGCCTGGAG
TATCGGATCATGGTGCCGCT

Downstream 100 bases:

>100_bases
CACACGACGACGGACTGCCCAACGATCCCGAAGGTATCAGACTGATGATCCATGCCCTTGTTGATGGCGAGCTTGATGCG
GCGGCCGCTCTTGCCGTGGA

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MSERALAERFNEVVLPHLGDALALARWLTGNAADAEDVVQDACIKAHAGISGYAGGNARAWLLTIVRNTSYTWMARNRPR
AMMAVGDLGDLDDMAAAHGTSMPDEDGPEASLIAKADTAALEAAIAALPQPFRETLVLRDINGLSYREISAMLAVPIGTV
MSRLARARGLLATELGRTS

Sequences:

>Translated_179_residues
MSERALAERFNEVVLPHLGDALALARWLTGNAADAEDVVQDACIKAHAGISGYAGGNARAWLLTIVRNTSYTWMARNRPR
AMMAVGDLGDLDDMAAAHGTSMPDEDGPEASLIAKADTAALEAAIAALPQPFRETLVLRDINGLSYREISAMLAVPIGTV
MSRLARARGLLATELGRTS
>Mature_178_residues
SERALAERFNEVVLPHLGDALALARWLTGNAADAEDVVQDACIKAHAGISGYAGGNARAWLLTIVRNTSYTWMARNRPRA
MMAVGDLGDLDDMAAAHGTSMPDEDGPEASLIAKADTAALEAAIAALPQPFRETLVLRDINGLSYREISAMLAVPIGTVM
SRLARARGLLATELGRTS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=183, Percent_Identity=29.5081967213115, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19001; Mature: 18870

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERALAERFNEVVLPHLGDALALARWLTGNAADAEDVVQDACIKAHAGISGYAGGNARA
CCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCE
WLLTIVRNTSYTWMARNRPRAMMAVGDLGDLDDMAAAHGTSMPDEDGPEASLIAKADTAA
EEEEEECCCCEEEEECCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCEEEEHHHHHH
LEAAIAALPQPFRETLVLRDINGLSYREISAMLAVPIGTVMSRLARARGLLATELGRTS
HHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCC
>Mature Secondary Structure 
SERALAERFNEVVLPHLGDALALARWLTGNAADAEDVVQDACIKAHAGISGYAGGNARA
CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCE
WLLTIVRNTSYTWMARNRPRAMMAVGDLGDLDDMAAAHGTSMPDEDGPEASLIAKADTAA
EEEEEECCCCEEEEECCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCEEEEHHHHHH
LEAAIAALPQPFRETLVLRDINGLSYREISAMLAVPIGTVMSRLARARGLLATELGRTS
HHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]