| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
Click here to switch to the map view.
The map label for this gene is 13473262
Identifier: 13473262
GI number: 13473262
Start: 3053648
End: 3054109
Strand: Direct
Name: 13473262
Synonym: mlr3802
Alternate gene names: NA
Gene position: 3053648-3054109 (Clockwise)
Preceding gene: 13473261
Following gene: 13473263
Centisome position: 43.4
GC content: 64.72
Gene sequence:
>462_bases ATGACGCCTTACATCCGGCTCGCCGAACTCGGCCTGACGCTGCCCGAGCCGCCGACGCCCATCGCCAATTTCGTCACCCA TGCTGAGAGCGGACGATTGATCTTCCTGTCCGGCCAGGGGCCGCTGCGTGCCGACGGCACGCTCTGCACCGGCAAAGTCG GCGAGGACGTCACCGTCGAACAGGCCTATGAGCATGCGCGCCTGACCGGGCTTAATCTGCTGGCCGTCATGCATGCCGCC GCTGGCGATCTCGGCCGCATCGTGCGCGTCGTCAAGCTGCTCGGCTTCGTCAACGCGACGCCGACCTTCAGCGACCACCC GAAAGTGGTCAATGGCTGTTCGGACCTGTTCGCCGATGTCTTCGACAAGATCGGCGGCCATGCCCGTTCGGCGATCGGCG TCGGCTCGCTGCCTGGAAACATCACTGTTGAAATCGAGGCGGTCGTCGAGATCGCCGCATGA
Upstream 100 bases:
>100_bases CGGAAACCAGCAATGAGCGCCTCCGAACCTTCCTGGCGCGCTTCCGCGCCTCGCATTTCTGACATTGGACGGCCCGTGCC GTCCCAAGGAGCCTGCTTCC
Downstream 100 bases:
>100_bases CCTGCCGCTCACGGGATCCGCTCACATGAAAACCTATTCCGACACCGGTTCCAACACCACCATTCGCGAACGGCTGGGTT TGCGGCCTATCATCAACGTC
Product: transcription regulator
Products: NA
Alternate protein names: Translation Initiation Inhibitor; Endoribonuclease L-PSP Family Protein; Translation Initiation Inhibitor YjgF Family; Endoribonuclease L-Psp; Endoribonuclease; Endoribonuclease L-PSP Superfamily; Transcriptional Regulator; L-PSP Family Endoribonuclease; Transcription Regulator; Translation Initiation Inhibitor Protein; Endoribonuclease Family Protein; Endoribonuclease L-PSP Family; Translation Initiation Inhibitor Protein YjgF Family; 2-Aminomuconate Deaminase; YjgF-Family Protein; Creatininase; Translation Initiation Inhibitor YjgF; YjgF Family Translation Initiation Inhibitor; Endoribonuclease-L-PSP Family Protein
Number of amino acids: Translated: 153; Mature: 152
Protein sequence:
>153_residues MTPYIRLAELGLTLPEPPTPIANFVTHAESGRLIFLSGQGPLRADGTLCTGKVGEDVTVEQAYEHARLTGLNLLAVMHAA AGDLGRIVRVVKLLGFVNATPTFSDHPKVVNGCSDLFADVFDKIGGHARSAIGVGSLPGNITVEIEAVVEIAA
Sequences:
>Translated_153_residues MTPYIRLAELGLTLPEPPTPIANFVTHAESGRLIFLSGQGPLRADGTLCTGKVGEDVTVEQAYEHARLTGLNLLAVMHAA AGDLGRIVRVVKLLGFVNATPTFSDHPKVVNGCSDLFADVFDKIGGHARSAIGVGSLPGNITVEIEAVVEIAA >Mature_152_residues TPYIRLAELGLTLPEPPTPIANFVTHAESGRLIFLSGQGPLRADGTLCTGKVGEDVTVEQAYEHARLTGLNLLAVMHAAA GDLGRIVRVVKLLGFVNATPTFSDHPKVVNGCSDLFADVFDKIGGHARSAIGVGSLPGNITVEIEAVVEIAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15998; Mature: 15866
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPYIRLAELGLTLPEPPTPIANFVTHAESGRLIFLSGQGPLRADGTLCTGKVGEDVTVE CCCCEEHHCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCEEEECCCCCCCCHH QAYEHARLTGLNLLAVMHAAAGDLGRIVRVVKLLGFVNATPTFSDHPKVVNGCSDLFADV HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH FDKIGGHARSAIGVGSLPGNITVEIEAVVEIAA HHHHCCCHHHHCCCCCCCCCEEEEEEEEEEECC >Mature Secondary Structure TPYIRLAELGLTLPEPPTPIANFVTHAESGRLIFLSGQGPLRADGTLCTGKVGEDVTVE CCCEEHHCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCEEEECCCCCCCCHH QAYEHARLTGLNLLAVMHAAAGDLGRIVRVVKLLGFVNATPTFSDHPKVVNGCSDLFADV HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH FDKIGGHARSAIGVGSLPGNITVEIEAVVEIAA HHHHCCCHHHHCCCCCCCCCEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA