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The map label for this gene is dgdR [H]

Identifier: 13473034

GI number: 13473034

Start: 2837331

End: 2838206

Strand: Reverse

Name: dgdR [H]

Synonym: mll3515

Alternate gene names: 13473034

Gene position: 2838206-2837331 (Counterclockwise)

Preceding gene: 82791994

Following gene: 13473030

Centisome position: 40.34

GC content: 67.24

Gene sequence:

>876_bases
ATGATGGACAGCATGCGCCCGACCCTCGACAGCGATCTCCTGCGCACCTTCGTCGCCATAGCCGAGGCCGGCAATTTCAC
CCGGGCGGCCGAGCAGGCCGGCCGCACCCAGTCGGCCGTGTCGATGCAGATGAAGAAGCTCGAGGAACTGGTCGGCGACA
GCCTGTTCGAGCGCGGCTCGCGCGGCGTCGCGCTGACGCGGCGCGGCGGCGAACTCATCGTCAACGCCCGCCGCATCGTC
TCGCTGCTCGACGAAACGGCGGCGTCGATGGCGGCGCCGCCGCTCGGCGGGCCGGTGCGCATCGGCATTCCTGAGGAATA
TGGCCACGCCATCCTGTCGCGCGCGCTCGGCGCGTTTTCGAAACGCCACACCAAGGTCGAGGTCACCGTGCGCTACGCGC
ATTCGGAGGCGCAGCTGGCGGCACTCGCCGCCGGCGAACTCGATCTGTGCGTGGTGTTCGAATGGCAGGATCCGGCCGGC
GGCGAAGTGCTGATGCACGACCCGACGGTCTGGGTGACGTCGACCCTGCACCACATGCACGAGGAACGGCCGGTGCCGAT
CGCGCTCTACAACCGGGTCAGTTGGTGCAAGGACTTCGCCATCAAGTCTCTGGAGCAGCGCGGGCTTGCCTATCGCGTCG
CCTATACCAGCGACACCACCGGTGGTCTGAAGCTCGCGGTCACCTCAGGACTGGCGATCGCGCCGATCTCGCGCAGCAAC
ATTCCGGACGGCTGCCGCGAACTGACGTCCGCCGACGGGTTCGGTGACATCGATGCCTCCAATGTGGTGATGCATCGCAA
CCCGAACGCGTCAGGCGAGGCGATCGACGGCATGCAGGAGGCGATCCGCGAGGCGTTCGTCAACCGGCAAGGTTAG

Upstream 100 bases:

>100_bases
GCCGATTTCGCAGCCGCATATCCAATGGGTAAGGCAACTATCGTCCGGCGTTTGACATGTTGCAAACGAATTGGAATGAT
GCCTGCAATCAAATCTGCTT

Downstream 100 bases:

>100_bases
TCTCTCACATCCTCATAGAAGGTCAGGCGGTTGCCGAACGGATCGTCGACTGTGACCTCCTTCGTCTTCCAAGGCGTCTC
CTCCAACCCAGGCCTGGCAA

Product: transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MMDSMRPTLDSDLLRTFVAIAEAGNFTRAAEQAGRTQSAVSMQMKKLEELVGDSLFERGSRGVALTRRGGELIVNARRIV
SLLDETAASMAAPPLGGPVRIGIPEEYGHAILSRALGAFSKRHTKVEVTVRYAHSEAQLAALAAGELDLCVVFEWQDPAG
GEVLMHDPTVWVTSTLHHMHEERPVPIALYNRVSWCKDFAIKSLEQRGLAYRVAYTSDTTGGLKLAVTSGLAIAPISRSN
IPDGCRELTSADGFGDIDASNVVMHRNPNASGEAIDGMQEAIREAFVNRQG

Sequences:

>Translated_291_residues
MMDSMRPTLDSDLLRTFVAIAEAGNFTRAAEQAGRTQSAVSMQMKKLEELVGDSLFERGSRGVALTRRGGELIVNARRIV
SLLDETAASMAAPPLGGPVRIGIPEEYGHAILSRALGAFSKRHTKVEVTVRYAHSEAQLAALAAGELDLCVVFEWQDPAG
GEVLMHDPTVWVTSTLHHMHEERPVPIALYNRVSWCKDFAIKSLEQRGLAYRVAYTSDTTGGLKLAVTSGLAIAPISRSN
IPDGCRELTSADGFGDIDASNVVMHRNPNASGEAIDGMQEAIREAFVNRQG
>Mature_291_residues
MMDSMRPTLDSDLLRTFVAIAEAGNFTRAAEQAGRTQSAVSMQMKKLEELVGDSLFERGSRGVALTRRGGELIVNARRIV
SLLDETAASMAAPPLGGPVRIGIPEEYGHAILSRALGAFSKRHTKVEVTVRYAHSEAQLAALAAGELDLCVVFEWQDPAG
GEVLMHDPTVWVTSTLHHMHEERPVPIALYNRVSWCKDFAIKSLEQRGLAYRVAYTSDTTGGLKLAVTSGLAIAPISRSN
IPDGCRELTSADGFGDIDASNVVMHRNPNASGEAIDGMQEAIREAFVNRQG

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=290, Percent_Identity=30.6896551724138, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787879, Length=161, Percent_Identity=32.2981366459627, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790399, Length=143, Percent_Identity=34.965034965035, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87081904, Length=140, Percent_Identity=31.4285714285714, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI48994962, Length=149, Percent_Identity=28.8590604026846, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786713, Length=82, Percent_Identity=40.2439024390244, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789173, Length=130, Percent_Identity=31.5384615384615, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786401, Length=79, Percent_Identity=45.5696202531646, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI2367136, Length=144, Percent_Identity=32.6388888888889, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31458; Mature: 31458

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDSMRPTLDSDLLRTFVAIAEAGNFTRAAEQAGRTQSAVSMQMKKLEELVGDSLFERGS
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
RGVALTRRGGELIVNARRIVSLLDETAASMAAPPLGGPVRIGIPEEYGHAILSRALGAFS
CCEEEEECCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHH
KRHTKVEVTVRYAHSEAQLAALAAGELDLCVVFEWQDPAGGEVLMHDPTVWVTSTLHHMH
HCCCEEEEEEEEECCCHHHHHHCCCCCEEEEEEEECCCCCCEEEEECCCHHHHHHHHHHH
EERPVPIALYNRVSWCKDFAIKSLEQRGLAYRVAYTSDTTGGLKLAVTSGLAIAPISRSN
HCCCCCEEHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCEEEECCCCCC
IPDGCRELTSADGFGDIDASNVVMHRNPNASGEAIDGMQEAIREAFVNRQG
CCHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMDSMRPTLDSDLLRTFVAIAEAGNFTRAAEQAGRTQSAVSMQMKKLEELVGDSLFERGS
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
RGVALTRRGGELIVNARRIVSLLDETAASMAAPPLGGPVRIGIPEEYGHAILSRALGAFS
CCEEEEECCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHH
KRHTKVEVTVRYAHSEAQLAALAAGELDLCVVFEWQDPAGGEVLMHDPTVWVTSTLHHMH
HCCCEEEEEEEEECCCHHHHHHCCCCCEEEEEEEECCCCCCEEEEECCCHHHHHHHHHHH
EERPVPIALYNRVSWCKDFAIKSLEQRGLAYRVAYTSDTTGGLKLAVTSGLAIAPISRSN
HCCCCCEEHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCEEEECCCCCC
IPDGCRELTSADGFGDIDASNVVMHRNPNASGEAIDGMQEAIREAFVNRQG
CCHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]