BacMap

Definition	Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession	NC_002678
Length	7,036,071

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The map label for this gene is ybbO [H]

Identifier: 13473008

GI number: 13473008

Start: 2808946

End: 2809770

Strand: Direct

Name: ybbO [H]

Synonym: mlr3482

Alternate gene names: 13473008

Gene position: 2808946-2809770 (Clockwise)

Preceding gene: 13473006

Following gene: 13473009

Centisome position: 39.92

GC content: 64.48

Gene sequence:

>825_bases
TTGCGCACCATCATCATCACCGGCGCCTCGTCCGGCATAGGTGCATATTGCGCCCGGGCACTCAAGGCGGAAGGCTGGCG
GGTCTTTGCAACAGCCCGAAAACCCGAGGACATCGCCGCCCTTGAAAGCGACGGCATCGAGGCTTTCTACCTCGACTACA
GCGAACCGGACTCCATTGCTGCCCTGGTGGCGGCGGTGCTCGAGCGCACCGGCGGCCGGCTCGATGCCCTGTTCAACAAC
GGCGCATACGCCCAGGCCGGTGCGGTCGAGGATCTTTCGGTGGCCGCGCTCAAGGAGCAGTTCGAGGTGAATTTCTTCGG
CTGGCATGATCTGACCAGCCGCCTGGTTCCGGCGATGCGCCGCCAGGGTCACGGCCGTCTCGTCCATTGCTCGTCGATCC
TCGGTCTGGTGCCGGTGCGCTTTCGCGGCGCCTATTCGGCATCCAAACATGCGCTCGAGGCGCTGATGCTCTGCCAGCGC
CAGGAACTGGATGGCAGCGGCGTTCATGTTTCGCTGATCGAACCGGGGCCGGTGAAATCGAAGATCGCCAGCAACGGCCT
GCCCTGGTTCCTGAAAAACATCGACATCGAGAATTCCGTGCACCGGGCGGACTATGCCGCGCAGCTGGAGCGATTGCGCG
CCGGCGGCAGCCAATCGGCGCTGAAGCCCGGGCCGGAAGTGGTCCACAAGGTTCTGCGTCATGCCCTTCTGTCGCGGTGC
CCGCGCCCGCACTATGTGGTAACAGTGCCGGCCAGAATCGGCGCGGCGCTCAAACGTATCCTGCCGGCATCGATGCTCTA
CCGCCTGATGGCCAAACGCGCCTGA

Upstream 100 bases:

>100_bases
GAACCCGCGTTCCCTTCGATTGTCTCGACGCCGCGAATATGGGAAGTGAATGCGGCAAATGGCAACCCTAGACGAAACCA
CGAGTCCGACGGCGCAGCAA

Downstream 100 bases:

>100_bases
ACGCGAAACAACTGGAAACGCAACAATGGCAACCGTCTTCAACATCCTCGCCATTCTGGTCATGGCCGCCGTGGCGATCG
TGCTGATCCGAGGCCTCATC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MRTIIITGASSGIGAYCARALKAEGWRVFATARKPEDIAALESDGIEAFYLDYSEPDSIAALVAAVLERTGGRLDALFNN
GAYAQAGAVEDLSVAALKEQFEVNFFGWHDLTSRLVPAMRRQGHGRLVHCSSILGLVPVRFRGAYSASKHALEALMLCQR
QELDGSGVHVSLIEPGPVKSKIASNGLPWFLKNIDIENSVHRADYAAQLERLRAGGSQSALKPGPEVVHKVLRHALLSRC
PRPHYVVTVPARIGAALKRILPASMLYRLMAKRA

Sequences:

>Translated_274_residues
MRTIIITGASSGIGAYCARALKAEGWRVFATARKPEDIAALESDGIEAFYLDYSEPDSIAALVAAVLERTGGRLDALFNN
GAYAQAGAVEDLSVAALKEQFEVNFFGWHDLTSRLVPAMRRQGHGRLVHCSSILGLVPVRFRGAYSASKHALEALMLCQR
QELDGSGVHVSLIEPGPVKSKIASNGLPWFLKNIDIENSVHRADYAAQLERLRAGGSQSALKPGPEVVHKVLRHALLSRC
PRPHYVVTVPARIGAALKRILPASMLYRLMAKRA
>Mature_274_residues
MRTIIITGASSGIGAYCARALKAEGWRVFATARKPEDIAALESDGIEAFYLDYSEPDSIAALVAAVLERTGGRLDALFNN
GAYAQAGAVEDLSVAALKEQFEVNFFGWHDLTSRLVPAMRRQGHGRLVHCSSILGLVPVRFRGAYSASKHALEALMLCQR
QELDGSGVHVSLIEPGPVKSKIASNGLPWFLKNIDIENSVHRADYAAQLERLRAGGSQSALKPGPEVVHKVLRHALLSRC
PRPHYVVTVPARIGAALKRILPASMLYRLMAKRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=198, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI7657478, Length=191, Percent_Identity=34.5549738219895, Blast_Score=101, Evalue=8e-22,
Organism=Homo sapiens, GI150247226, Length=259, Percent_Identity=32.046332046332, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI40548397, Length=284, Percent_Identity=27.8169014084507, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI214010158, Length=284, Percent_Identity=27.8169014084507, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI214010156, Length=284, Percent_Identity=27.8169014084507, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI22758144, Length=284, Percent_Identity=27.8169014084507, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI7706318, Length=195, Percent_Identity=34.8717948717949, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI19743808, Length=276, Percent_Identity=30.0724637681159, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI223718074, Length=256, Percent_Identity=32.421875, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI119392083, Length=195, Percent_Identity=33.8461538461538, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI4504503, Length=289, Percent_Identity=28.3737024221453, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI157739938, Length=190, Percent_Identity=28.9473684210526, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI109715829, Length=196, Percent_Identity=29.5918367346939, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI22507405, Length=262, Percent_Identity=28.6259541984733, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI44680136, Length=185, Percent_Identity=29.7297297297297, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI44680133, Length=185, Percent_Identity=29.7297297297297, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI17738292, Length=185, Percent_Identity=29.7297297297297, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI38348362, Length=177, Percent_Identity=29.9435028248588, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI38424085, Length=176, Percent_Identity=30.1136363636364, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI32455239, Length=177, Percent_Identity=32.2033898305085, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI5031765, Length=177, Percent_Identity=32.2033898305085, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI1786701, Length=269, Percent_Identity=36.8029739776952, Blast_Score=175, Evalue=2e-45,
Organism=Escherichia coli, GI87082100, Length=191, Percent_Identity=29.8429319371728, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786812, Length=222, Percent_Identity=28.8288288288288, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787820, Length=186, Percent_Identity=27.9569892473118, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87082160, Length=186, Percent_Identity=26.8817204301075, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787335, Length=187, Percent_Identity=26.2032085561497, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71997402, Length=215, Percent_Identity=29.3023255813954, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17570069, Length=217, Percent_Identity=28.110599078341, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17557780, Length=264, Percent_Identity=27.2727272727273, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI115534660, Length=259, Percent_Identity=27.4131274131274, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193210355, Length=259, Percent_Identity=28.1853281853282, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=221, Percent_Identity=28.0542986425339, Blast_Score=67, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6322067, Length=153, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21358495, Length=284, Percent_Identity=29.2253521126761, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24641232, Length=209, Percent_Identity=28.7081339712919, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI116007236, Length=216, Percent_Identity=31.0185185185185, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI28571526, Length=258, Percent_Identity=27.1317829457364, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24580925, Length=195, Percent_Identity=29.7435897435897, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI116007238, Length=174, Percent_Identity=31.6091954022989, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28571387, Length=197, Percent_Identity=29.9492385786802, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21357041, Length=194, Percent_Identity=28.3505154639175, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI23397609, Length=188, Percent_Identity=30.8510638297872, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24643142, Length=187, Percent_Identity=29.9465240641711, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21356301, Length=184, Percent_Identity=29.3478260869565, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24648693, Length=222, Percent_Identity=30.6306306306306, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21355889, Length=222, Percent_Identity=30.6306306306306, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007234, Length=215, Percent_Identity=30.2325581395349, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21355319, Length=189, Percent_Identity=25.9259259259259, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI19922066, Length=185, Percent_Identity=27.027027027027, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29747; Mature: 29747

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTIIITGASSGIGAYCARALKAEGWRVFATARKPEDIAALESDGIEAFYLDYSEPDSIA
CCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEEECCCCCHHHH
ALVAAVLERTGGRLDALFNNGAYAQAGAVEDLSVAALKEQFEVNFFGWHDLTSRLVPAMR
HHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHEEEEECHHHHHHHHHHHHH
RQGHGRLVHCSSILGLVPVRFRGAYSASKHALEALMLCQRQELDGSGVHVSLIEPGPVKS
HCCCCCEEEHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHH
KIASNGLPWFLKNIDIENSVHRADYAAQLERLRAGGSQSALKPGPEVVHKVLRHALLSRC
HHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHC
PRPHYVVTVPARIGAALKRILPASMLYRLMAKRA
CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRTIIITGASSGIGAYCARALKAEGWRVFATARKPEDIAALESDGIEAFYLDYSEPDSIA
CCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEEECCCCCHHHH
ALVAAVLERTGGRLDALFNNGAYAQAGAVEDLSVAALKEQFEVNFFGWHDLTSRLVPAMR
HHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHEEEEECHHHHHHHHHHHHH
RQGHGRLVHCSSILGLVPVRFRGAYSASKHALEALMLCQRQELDGSGVHVSLIEPGPVKS
HCCCCCEEEHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHH
KIASNGLPWFLKNIDIENSVHRADYAAQLERLRAGGSQSALKPGPEVVHKVLRHALLSRC
HHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHC
PRPHYVVTVPARIGAALKRILPASMLYRLMAKRA
CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]