Click here to switch to the map view.

The map label for this gene is ydeS [H]

Identifier: 13472994

GI number: 13472994

Start: 2793421

End: 2794017

Strand: Direct

Name: ydeS [H]

Synonym: mlr3465

Alternate gene names: 13472994

Gene position: 2793421-2794017 (Clockwise)

Preceding gene: 13472992

Following gene: 13472996

Centisome position: 39.7

GC content: 65.33

Gene sequence:

>597_bases
ATGGGCGAAATCGCCGATCCGGCACGCAAATCGATTGGCGCCAGGCGCAATCCCGACAGCGCCGAAGCCATTCTGGAGGC
TGCCGAAGCCGTGCTGATCGAGGCCGGCTATGCCGGTTTCTCGATCGAGGCGGTGGCGCGCCGCGCCCGTGCCGGCAAGC
CGACCATTTACCGCTGGTGGCCTAGCAAGGCGGCGCTGCTGCTCGAAGTCTACCAGCGCCAGAAGCGCGTCGACATTCCC
GATACGGGAAGCCTGGAGGAGGATCTCGTCGGCTTCCTGGTCAATCTGTTCGCGCATTGGCGCGAGACATCGTCGGGCAG
CGTCTTCCGGTCGCTGATCGCCGAGGCACAGTCGGATGAAACCGCGGCGGCGGCCCTGGCGGGCTATGCCGGAGCGCGCC
GCACCCACACCGGCCAGATCATCGAGCGCGCCAAGGCGCGGGGCGAGATCGCCGGCGATATTGATCCGGGCGTGGTTGCC
GATATCATCGCTTCCTACGCCTGGCGGCATCTCCTGACCAACCGGCTCGATGAACCCAAGGCCACGATACGCAAAATGGT
CCGCTATCTCCTGCAAGGCATAGCAGCCGGCAGATAA

Upstream 100 bases:

>100_bases
TATTTTGCGGCCAAATGGCTTCGTTTGGTCCGCAAAAGACAAACGGTTGCCGGCGGGTTGTTTCAGCCGAAACGAGAAAC
CGCTTCAGGAGGAACGGCTC

Downstream 100 bases:

>100_bases
CGGCATGGCGGTCAACAAAAAAAAGGGCGCGGCAACCCTTGGCTGCCGCGCCCTTTTTGAAAAGATCGTTCAGACTTACT
TGCCGGCTTCCATCGTATCG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MGEIADPARKSIGARRNPDSAEAILEAAEAVLIEAGYAGFSIEAVARRARAGKPTIYRWWPSKAALLLEVYQRQKRVDIP
DTGSLEEDLVGFLVNLFAHWRETSSGSVFRSLIAEAQSDETAAAALAGYAGARRTHTGQIIERAKARGEIAGDIDPGVVA
DIIASYAWRHLLTNRLDEPKATIRKMVRYLLQGIAAGR

Sequences:

>Translated_198_residues
MGEIADPARKSIGARRNPDSAEAILEAAEAVLIEAGYAGFSIEAVARRARAGKPTIYRWWPSKAALLLEVYQRQKRVDIP
DTGSLEEDLVGFLVNLFAHWRETSSGSVFRSLIAEAQSDETAAAALAGYAGARRTHTGQIIERAKARGEIAGDIDPGVVA
DIIASYAWRHLLTNRLDEPKATIRKMVRYLLQGIAAGR
>Mature_197_residues
GEIADPARKSIGARRNPDSAEAILEAAEAVLIEAGYAGFSIEAVARRARAGKPTIYRWWPSKAALLLEVYQRQKRVDIPD
TGSLEEDLVGFLVNLFAHWRETSSGSVFRSLIAEAQSDETAAAALAGYAGARRTHTGQIIERAKARGEIAGDIDPGVVAD
IIASYAWRHLLTNRLDEPKATIRKMVRYLLQGIAAGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21556; Mature: 21425

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEIADPARKSIGARRNPDSAEAILEAAEAVLIEAGYAGFSIEAVARRARAGKPTIYRWW
CCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEC
PSKAALLLEVYQRQKRVDIPDTGSLEEDLVGFLVNLFAHWRETSSGSVFRSLIAEAQSDE
CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCH
TAAAALAGYAGARRTHTGQIIERAKARGEIAGDIDPGVVADIIASYAWRHLLTNRLDEPK
HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHH
ATIRKMVRYLLQGIAAGR
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GEIADPARKSIGARRNPDSAEAILEAAEAVLIEAGYAGFSIEAVARRARAGKPTIYRWW
CCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEC
PSKAALLLEVYQRQKRVDIPDTGSLEEDLVGFLVNLFAHWRETSSGSVFRSLIAEAQSDE
CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCH
TAAAALAGYAGARRTHTGQIIERAKARGEIAGDIDPGVVADIIASYAWRHLLTNRLDEPK
HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHH
ATIRKMVRYLLQGIAAGR
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]