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The map label for this gene is cph2 [H]

Identifier: 13472974

GI number: 13472974

Start: 2776102

End: 2777382

Strand: Reverse

Name: cph2 [H]

Synonym: mll3440

Alternate gene names: 13472974

Gene position: 2777382-2776102 (Counterclockwise)

Preceding gene: 13472975

Following gene: 13472973

Centisome position: 39.47

GC content: 64.87

Gene sequence:

>1281_bases
ATGGCGCAGGCGACATCGCCGATCGAGCTGGCGTTGACCACGGGGCGTGGGCATCAGGCCGAGGTGCGGCTGGCAAAGCC
GGACGGATCATACCTGCCGGTGATTGCAAGCTGCAATCCGCTCAATCGTTCCGACGGCGGGATCGTATTGACGTTGAACG
ACATCAGCGAGCTGCGCAGCGCCGAGCGGGCGGTCAGCGATCGCGCCGAGGAACTGGCGACGCTCAATCGCGAACTGAAG
GAGACGTCCCAGGCAACGACCCGGCTGGTCAAGCTCGGCGAACTGCTTCAGGCATGCGTCACCTTCCATGAAGCCTTTTC
CGTCGTCGGCTCGGCCATGCCCGATTTCTTCGGCGGGTTGAGCGGGACCGTTCATCTGACCAGCGCCTCGCGCAACCTGG
TCGAGGAAATGGCGCATTGGGGCGCCGTCCGTTCGAGCGTTGGCCAGTTCGCGCCGGAAGATTGCTGGGCGCTGCGGCGC
GGCCAGGAACATGTTGCCGGTCCCGGCATGCTGACGCCGCGCTGCAACCACATCACCGAGAATGGCGGCCGCGGTTATGT
CTGCATGCCTCTGGCGGCGCAGGGGGAGACGCTTGGCATCGTGCATCTGTGCGAACCGGACGCGGCCGACAGACCGGACT
GGCTGACCGAGCGGCAACAGATCCTGCGCGGCGTCGTCGACACACTGGCCCTGGCATTGGCCAATCTGCGCCTGCGCGAA
ACATTGCGGCAACAATCGATCCGCGATCCGAACACCGGGCTCTACAACCGCCGCTATCTGGAGGAAACGAGCAGTCGCGA
ACTGAGGCGCATGGAGCGTTCCGGGCAGCCGCTGGCGATGATCATGCTCGATGTCGATCATTTCAAGCAGTTCAACGACA
CGTTCGGCCATGAGGCGGGCGATCTCGTGCTCAAGCAGGTCGCCGCCACGCTGCTCGACCATGCCAGGGAAAGCGACGTG
GTGTCACGCTACGGTGGCGAGGAGTTCGCCCTTATGATGCCGGGAACGTCGCTCGCCGATGCCGCCGAGCGCGCCGAGGC
GCTGCGCAAGGCGATCAAGCAGCTGCATCTGACGCATCGCGGCCGCACGCTCGGAACCATCACGGCCTCGTTCGGCGTGT
CCGCCTTCCCGGAACTCGGCGCGTCATGGGTCGAAATCGTCAACGCCGCGGATCGTTCGCTCTATCAGGCAAAGGCGGAC
GGCCGCGACCGCGTTGTTGCCGGATTGGGCAGGGCCGATCCGCAATGGGATCTTTCCACCGCCAGCCAAAGCGTGGCTTA
A

Upstream 100 bases:

>100_bases
CAATCCTGCGGCCGCCGAGATCGTCGGACTGCGCAACGACAGGATCGAAGGGCAGGATTGGCGGTCGATCCTCGACATAA
GGGGACTGTCGGGAGACAGG

Downstream 100 bases:

>100_bases
CCCGACAGAACGAGTTCGGCATATCCACGACATGGCATGCCGGGCGAACCAAAAGGAATTGCCCGCGGGCGACGTTTGGC
AATCAGCGCGGTGCCGGATG

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MAQATSPIELALTTGRGHQAEVRLAKPDGSYLPVIASCNPLNRSDGGIVLTLNDISELRSAERAVSDRAEELATLNRELK
ETSQATTRLVKLGELLQACVTFHEAFSVVGSAMPDFFGGLSGTVHLTSASRNLVEEMAHWGAVRSSVGQFAPEDCWALRR
GQEHVAGPGMLTPRCNHITENGGRGYVCMPLAAQGETLGIVHLCEPDAADRPDWLTERQQILRGVVDTLALALANLRLRE
TLRQQSIRDPNTGLYNRRYLEETSSRELRRMERSGQPLAMIMLDVDHFKQFNDTFGHEAGDLVLKQVAATLLDHARESDV
VSRYGGEEFALMMPGTSLADAAERAEALRKAIKQLHLTHRGRTLGTITASFGVSAFPELGASWVEIVNAADRSLYQAKAD
GRDRVVAGLGRADPQWDLSTASQSVA

Sequences:

>Translated_426_residues
MAQATSPIELALTTGRGHQAEVRLAKPDGSYLPVIASCNPLNRSDGGIVLTLNDISELRSAERAVSDRAEELATLNRELK
ETSQATTRLVKLGELLQACVTFHEAFSVVGSAMPDFFGGLSGTVHLTSASRNLVEEMAHWGAVRSSVGQFAPEDCWALRR
GQEHVAGPGMLTPRCNHITENGGRGYVCMPLAAQGETLGIVHLCEPDAADRPDWLTERQQILRGVVDTLALALANLRLRE
TLRQQSIRDPNTGLYNRRYLEETSSRELRRMERSGQPLAMIMLDVDHFKQFNDTFGHEAGDLVLKQVAATLLDHARESDV
VSRYGGEEFALMMPGTSLADAAERAEALRKAIKQLHLTHRGRTLGTITASFGVSAFPELGASWVEIVNAADRSLYQAKAD
GRDRVVAGLGRADPQWDLSTASQSVA
>Mature_425_residues
AQATSPIELALTTGRGHQAEVRLAKPDGSYLPVIASCNPLNRSDGGIVLTLNDISELRSAERAVSDRAEELATLNRELKE
TSQATTRLVKLGELLQACVTFHEAFSVVGSAMPDFFGGLSGTVHLTSASRNLVEEMAHWGAVRSSVGQFAPEDCWALRRG
QEHVAGPGMLTPRCNHITENGGRGYVCMPLAAQGETLGIVHLCEPDAADRPDWLTERQQILRGVVDTLALALANLRLRET
LRQQSIRDPNTGLYNRRYLEETSSRELRRMERSGQPLAMIMLDVDHFKQFNDTFGHEAGDLVLKQVAATLLDHARESDVV
SRYGGEEFALMMPGTSLADAAERAEALRKAIKQLHLTHRGRTLGTITASFGVSAFPELGASWVEIVNAADRSLYQAKADG
RDRVVAGLGRADPQWDLSTASQSVA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=173, Percent_Identity=41.6184971098266, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI145693134, Length=193, Percent_Identity=33.160621761658, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=37.7906976744186, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1786584, Length=166, Percent_Identity=33.7349397590361, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=34.3558282208589, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788381, Length=170, Percent_Identity=33.5294117647059, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1787802, Length=201, Percent_Identity=30.3482587064677, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=36.144578313253, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87081974, Length=176, Percent_Identity=30.1136363636364, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787541, Length=167, Percent_Identity=31.7365269461078, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081977, Length=209, Percent_Identity=28.2296650717703, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788085, Length=165, Percent_Identity=27.8787878787879, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 46405; Mature: 46274

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQATSPIELALTTGRGHQAEVRLAKPDGSYLPVIASCNPLNRSDGGIVLTLNDISELRS
CCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEECCHHHHHH
AERAVSDRAEELATLNRELKETSQATTRLVKLGELLQACVTFHEAFSVVGSAMPDFFGGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SGTVHLTSASRNLVEEMAHWGAVRSSVGQFAPEDCWALRRGQEHVAGPGMLTPRCNHITE
CCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCC
NGGRGYVCMPLAAQGETLGIVHLCEPDAADRPDWLTERQQILRGVVDTLALALANLRLRE
CCCCEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLRQQSIRDPNTGLYNRRYLEETSSRELRRMERSGQPLAMIMLDVDHFKQFNDTFGHEAG
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCHH
DLVLKQVAATLLDHARESDVVSRYGGEEFALMMPGTSLADAAERAEALRKAIKQLHLTHR
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHC
GRTLGTITASFGVSAFPELGASWVEIVNAADRSLYQAKADGRDRVVAGLGRADPQWDLST
CCEEEEEEHHCCCHHCHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCHHH
ASQSVA
HHHCCC
>Mature Secondary Structure 
AQATSPIELALTTGRGHQAEVRLAKPDGSYLPVIASCNPLNRSDGGIVLTLNDISELRS
CCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEECCHHHHHH
AERAVSDRAEELATLNRELKETSQATTRLVKLGELLQACVTFHEAFSVVGSAMPDFFGGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SGTVHLTSASRNLVEEMAHWGAVRSSVGQFAPEDCWALRRGQEHVAGPGMLTPRCNHITE
CCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCC
NGGRGYVCMPLAAQGETLGIVHLCEPDAADRPDWLTERQQILRGVVDTLALALANLRLRE
CCCCEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLRQQSIRDPNTGLYNRRYLEETSSRELRRMERSGQPLAMIMLDVDHFKQFNDTFGHEAG
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCHH
DLVLKQVAATLLDHARESDVVSRYGGEEFALMMPGTSLADAAERAEALRKAIKQLHLTHR
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHC
GRTLGTITASFGVSAFPELGASWVEIVNAADRSLYQAKADGRDRVVAGLGRADPQWDLST
CCEEEEEEHHCCCHHCHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCHHH
ASQSVA
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]