| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is oppD [H]
Identifier: 13472945
GI number: 13472945
Start: 2732226
End: 2733092
Strand: Direct
Name: oppD [H]
Synonym: mlr3400
Alternate gene names: 13472945
Gene position: 2732226-2733092 (Clockwise)
Preceding gene: 13472944
Following gene: 13472946
Centisome position: 38.83
GC content: 65.05
Gene sequence:
>867_bases GTGAGCGCGCTCGCTTCGATCCGCGACCTGACGGTGACCTATCGCCGCGACGGCACCGCGGTGGCGGCGCTGAAGAACAT CAACCTCGACATCGTGGCTGGCGAGCGTCTGGCCATCATCGGCGAAAGCGGCTCCGGCAAGAGTACGCTAGCGCTGGCGA TTGCGGGGTTGCTGCCAGCGAGTGCCAGGGTTGAGGGGCATGTCGATTGGTTCATAAACCCATCGTCAACGTTGGGTGCC AAGGCACCCCTCGTAGAGCGCAACCCTCAAAAATCCTTCGCCAAACCGAGCCAACCTCCCCTCCTAGGCCACGACATCGG CTTCGTCTTCCAGGACCCATCCGCCAGCCTCGATCCCGTGATGGCCATCGGCAAACAGATCGCCGAAGTCGCCCGCACCC ATCTCGGCCTCAACTGGCCACAGGCATACGCAAAAGCAAAAGCCTTGCTCGAACGCGTCCGCCTTCCCGACCCCGACTCG GCCCTGCACGCCTTCCCGCATCAGCTCTCCGGCGGCCAGAAGCAGCGCGTGGCGATTGCCGCGGCAATAGCTGCGGGGCC GAAACTGTTGATCGCCGACGAGGCGACCAGCGCGCTCGACACCATCGTGCAGGCAGAGATCGTCGCCTTGATCCGCCAGT TGGTGGCCGAGGACGGCATGACGCTGCTGTTCATCAGCCATGACATTGCGCTGGCGGCCGAACTCGCCGAGCGTATCGCC GTGTTTCGCCATGGCCAACTCGTCGAACTTGGCACGACGGCGCGGATTGTCGGCGCCCCGACCCAGCCCTACACACGCAC GCTGCTCGACGCCCATATCGGCCTCGACGCCGCGCCATTGCTGGACCAGGCCGGGCTCCCCGCATGA
Upstream 100 bases:
>100_bases TGTCGATCGTCCCGGGCATCGCGCTGGTTCTGACCGTGCTCGGCGTCTATCTCGCCGGCGAAGGCATTGTCGAGACGACG GCCGTCAGGAGAGGCCTGTC
Downstream 100 bases:
>100_bases GCCTGCTCGCGGTGTCCAACCTCACCAAACGCTACCATCGCGGCGGCAAAGCCGTAACCGCCGTCGACGATGTCTCTTTT CACATGGACCCCGGCGAAAC
Product: ABC transporter, ATP-binding protein
Products: NA
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MSALASIRDLTVTYRRDGTAVAALKNINLDIVAGERLAIIGESGSGKSTLALAIAGLLPASARVEGHVDWFINPSSTLGA KAPLVERNPQKSFAKPSQPPLLGHDIGFVFQDPSASLDPVMAIGKQIAEVARTHLGLNWPQAYAKAKALLERVRLPDPDS ALHAFPHQLSGGQKQRVAIAAAIAAGPKLLIADEATSALDTIVQAEIVALIRQLVAEDGMTLLFISHDIALAAELAERIA VFRHGQLVELGTTARIVGAPTQPYTRTLLDAHIGLDAAPLLDQAGLPA
Sequences:
>Translated_288_residues MSALASIRDLTVTYRRDGTAVAALKNINLDIVAGERLAIIGESGSGKSTLALAIAGLLPASARVEGHVDWFINPSSTLGA KAPLVERNPQKSFAKPSQPPLLGHDIGFVFQDPSASLDPVMAIGKQIAEVARTHLGLNWPQAYAKAKALLERVRLPDPDS ALHAFPHQLSGGQKQRVAIAAAIAAGPKLLIADEATSALDTIVQAEIVALIRQLVAEDGMTLLFISHDIALAAELAERIA VFRHGQLVELGTTARIVGAPTQPYTRTLLDAHIGLDAAPLLDQAGLPA >Mature_287_residues SALASIRDLTVTYRRDGTAVAALKNINLDIVAGERLAIIGESGSGKSTLALAIAGLLPASARVEGHVDWFINPSSTLGAK APLVERNPQKSFAKPSQPPLLGHDIGFVFQDPSASLDPVMAIGKQIAEVARTHLGLNWPQAYAKAKALLERVRLPDPDSA LHAFPHQLSGGQKQRVAIAAAIAAGPKLLIADEATSALDTIVQAEIVALIRQLVAEDGMTLLFISHDIALAAELAERIAV FRHGQLVELGTTARIVGAPTQPYTRTLLDAHIGLDAAPLLDQAGLPA
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961252, Length=241, Percent_Identity=31.1203319502075, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI4505771, Length=241, Percent_Identity=31.1203319502075, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI9961250, Length=241, Percent_Identity=31.1203319502075, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI171184400, Length=261, Percent_Identity=29.5019157088123, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI42741659, Length=253, Percent_Identity=30.8300395256917, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI42490749, Length=254, Percent_Identity=29.1338582677165, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI255708477, Length=250, Percent_Identity=28, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI145693107, Length=282, Percent_Identity=38.6524822695035, Blast_Score=195, Evalue=3e-51, Organism=Escherichia coli, GI1789963, Length=271, Percent_Identity=40.9594095940959, Blast_Score=187, Evalue=7e-49, Organism=Escherichia coli, GI48994883, Length=275, Percent_Identity=36.7272727272727, Blast_Score=184, Evalue=8e-48, Organism=Escherichia coli, GI1788506, Length=285, Percent_Identity=37.5438596491228, Blast_Score=181, Evalue=4e-47, Organism=Escherichia coli, GI1787500, Length=281, Percent_Identity=38.4341637010676, Blast_Score=171, Evalue=5e-44, Organism=Escherichia coli, GI1787759, Length=267, Percent_Identity=35.9550561797753, Blast_Score=157, Evalue=9e-40, Organism=Escherichia coli, GI1787548, Length=273, Percent_Identity=32.6007326007326, Blast_Score=154, Evalue=9e-39, Organism=Escherichia coli, GI1789891, Length=228, Percent_Identity=37.280701754386, Blast_Score=138, Evalue=5e-34, Organism=Escherichia coli, GI1787758, Length=293, Percent_Identity=33.1058020477816, Blast_Score=137, Evalue=9e-34, Organism=Escherichia coli, GI1789962, Length=252, Percent_Identity=32.5396825396825, Blast_Score=131, Evalue=6e-32, Organism=Escherichia coli, GI1787547, Length=283, Percent_Identity=31.4487632508834, Blast_Score=127, Evalue=7e-31, Organism=Escherichia coli, GI1788225, Length=250, Percent_Identity=33.6, Blast_Score=117, Evalue=6e-28, Organism=Escherichia coli, GI48994997, Length=268, Percent_Identity=30.5970149253731, Blast_Score=117, Evalue=7e-28, Organism=Escherichia coli, GI1787089, Length=252, Percent_Identity=34.9206349206349, Blast_Score=116, Evalue=1e-27, Organism=Escherichia coli, GI1789890, Length=254, Percent_Identity=30.7086614173228, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1787105, Length=252, Percent_Identity=36.1111111111111, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1786398, Length=278, Percent_Identity=28.4172661870504, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI1789032, Length=250, Percent_Identity=32.4, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI1787029, Length=237, Percent_Identity=33.3333333333333, Blast_Score=103, Evalue=9e-24, Organism=Escherichia coli, GI1789672, Length=253, Percent_Identity=31.6205533596838, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1787712, Length=245, Percent_Identity=32.2448979591837, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1788761, Length=250, Percent_Identity=33.6, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI87081791, Length=282, Percent_Identity=31.5602836879433, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1790162, Length=274, Percent_Identity=29.9270072992701, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1786703, Length=229, Percent_Identity=34.4978165938865, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787370, Length=254, Percent_Identity=30.7086614173228, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI87081709, Length=271, Percent_Identity=28.4132841328413, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1786563, Length=235, Percent_Identity=31.9148936170213, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI87082267, Length=270, Percent_Identity=28.1481481481481, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786872, Length=213, Percent_Identity=34.2723004694836, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1788450, Length=255, Percent_Identity=29.8039215686275, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1790467, Length=249, Percent_Identity=29.718875502008, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788644, Length=184, Percent_Identity=30.9782608695652, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI87081834, Length=255, Percent_Identity=29.8039215686275, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1790544, Length=267, Percent_Identity=28.4644194756554, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1787164, Length=224, Percent_Identity=32.1428571428571, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI1789873, Length=226, Percent_Identity=29.646017699115, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786345, Length=252, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1786253, Length=234, Percent_Identity=30.7692307692308, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1790190, Length=271, Percent_Identity=26.9372693726937, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI1786654, Length=264, Percent_Identity=28.7878787878788, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1789991, Length=235, Percent_Identity=26.8085106382979, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1790525, Length=251, Percent_Identity=26.6932270916335, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI2367384, Length=231, Percent_Identity=26.8398268398268, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1786653, Length=264, Percent_Identity=30.3030303030303, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1788210, Length=241, Percent_Identity=29.045643153527, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787792, Length=246, Percent_Identity=25.609756097561, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI48995001, Length=241, Percent_Identity=27.3858921161826, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1786981, Length=238, Percent_Identity=28.1512605042017, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1789586, Length=268, Percent_Identity=27.9850746268657, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI193202349, Length=257, Percent_Identity=32.295719844358, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI193209708, Length=253, Percent_Identity=33.9920948616601, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI71996550, Length=233, Percent_Identity=32.618025751073, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17541710, Length=257, Percent_Identity=30.7392996108949, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17567265, Length=255, Percent_Identity=28.6274509803922, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI193208177, Length=248, Percent_Identity=28.6290322580645, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17558664, Length=261, Percent_Identity=31.0344827586207, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17569143, Length=235, Percent_Identity=31.4893617021277, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI115535101, Length=247, Percent_Identity=28.3400809716599, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17533971, Length=269, Percent_Identity=28.996282527881, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71984940, Length=254, Percent_Identity=27.9527559055118, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17565938, Length=265, Percent_Identity=29.4339622641509, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI71992290, Length=259, Percent_Identity=27.027027027027, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17569145, Length=236, Percent_Identity=31.7796610169492, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17567269, Length=247, Percent_Identity=28.7449392712551, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI25146777, Length=91, Percent_Identity=42.8571428571429, Blast_Score=69, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6324985, Length=265, Percent_Identity=28.6792452830189, Blast_Score=82, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6323217, Length=244, Percent_Identity=31.9672131147541, Blast_Score=76, Evalue=5e-15, Organism=Saccharomyces cerevisiae, GI6324498, Length=248, Percent_Identity=22.9838709677419, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI23397593, Length=242, Percent_Identity=32.2314049586777, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI24641565, Length=242, Percent_Identity=31.404958677686, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24653245, Length=246, Percent_Identity=34.1463414634146, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI281363262, Length=246, Percent_Identity=34.1463414634146, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI85726357, Length=118, Percent_Identity=37.2881355932203, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI17136662, Length=245, Percent_Identity=30.6122448979592, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI19920532, Length=234, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI24580930, Length=234, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI24582014, Length=257, Percent_Identity=26.0700389105058, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24582012, Length=257, Percent_Identity=26.0700389105058, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI85724864, Length=262, Percent_Identity=26.3358778625954, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24580555, Length=262, Percent_Identity=26.3358778625954, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI85816269, Length=262, Percent_Identity=26.3358778625954, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24580553, Length=262, Percent_Identity=26.3358778625954, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 30252; Mature: 30121
Theoretical pI: Translated: 6.73; Mature: 6.73
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSALASIRDLTVTYRRDGTAVAALKNINLDIVAGERLAIIGESGSGKSTLALAIAGLLPA CCCHHHHHHEEEEEECCCCEEEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHHHCCC SARVEGHVDWFINPSSTLGAKAPLVERNPQKSFAKPSQPPLLGHDIGFVFQDPSASLDPV CCEECCCEEEEECCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCEEECCCCCCCCHH MAIGKQIAEVARTHLGLNWPQAYAKAKALLERVRLPDPDSALHAFPHQLSGGQKQRVAIA HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHCCCCHHHHEEE AAIAAGPKLLIADEATSALDTIVQAEIVALIRQLVAEDGMTLLFISHDIALAAELAERIA EEHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHH VFRHGQLVELGTTARIVGAPTQPYTRTLLDAHIGLDAAPLLDQAGLPA HHHCCCEEEECCCEEEEECCCCHHHHHHHHHHCCCCCHHHHHHCCCCC >Mature Secondary Structure SALASIRDLTVTYRRDGTAVAALKNINLDIVAGERLAIIGESGSGKSTLALAIAGLLPA CCHHHHHHEEEEEECCCCEEEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHHHCCC SARVEGHVDWFINPSSTLGAKAPLVERNPQKSFAKPSQPPLLGHDIGFVFQDPSASLDPV CCEECCCEEEEECCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCEEECCCCCCCCHH MAIGKQIAEVARTHLGLNWPQAYAKAKALLERVRLPDPDSALHAFPHQLSGGQKQRVAIA HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHCCCCHHHHEEE AAIAAGPKLLIADEATSALDTIVQAEIVALIRQLVAEDGMTLLFISHDIALAAELAERIA EEHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHH VFRHGQLVELGTTARIVGAPTQPYTRTLLDAHIGLDAAPLLDQAGLPA HHHCCCEEEECCCEEEEECCCCHHHHHHHHHHCCCCCHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]