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The map label for this gene is ugpC [C]

Identifier: 13472929

GI number: 13472929

Start: 2715494

End: 2716312

Strand: Reverse

Name: ugpC [C]

Synonym: mll3378

Alternate gene names: 13472929

Gene position: 2716312-2715494 (Counterclockwise)

Preceding gene: 13472930

Following gene: 13472925

Centisome position: 38.61

GC content: 65.08

Gene sequence:

>819_bases
GTGTGCGTCGCCCTCTCAACTCTCACGCCGTCATCCTCCGGCTTGACCGGAGGACCCGATGCCGAGATCAAGGACCGCGT
CGACCGCGCCGCCCGCACGCTCAGGATCGAACATCTGCTCGACCGCAAGACCGATCGCCTGTCCGGTGGCGAGATGCAGC
GCGTCTCGATCGGCCGCGCCATCGTGCGCAAGCCACGCGTGTTGCTGATGGACGAGCCGCTGTCGGCGCTCGATGCCAAA
TTGCGCGAGGCGCTGCGCGCGGAACTCAAGAACCTGCAAATGCAGCTCGGCGCCACCTTCCTGTTCGTTACCCACGACCA
GATCGAGGCGATGTCGATGGGCGACAAGGTCGGCGTCTTGAACCACGGCCGCATCGTCCAGACCGGCACACCGCACGAGA
TCTACAACAATCCGCGCGACACCTATGTGGCGAGCTTCGTCGGCTCGCCGCCGATGAACCTCATCGACGGCAGGCTGGTG
AATGGCCGCGCGGTGATGGCGCCGCTGAATTTCGAACTGCCCTTTTCAGGGGGAGCCAAGGCGAGTGGAGCGACCGACGG
TCGCCCGCTCGTCTTCGGCATCCGTCCGGAAGACGTCTATCTCGAGAGCGGCGCGCCGATCGAAGCGCGTGTCCATGATG
TCGAGAACCATGGCGTCGAAAAGATCCTGACGCTGCGCGTCGGCGACACGACGCTACGCGCCACCGTGCCGGCAAGGACC
GATGTCGCCATCGAGCAGCCGGTGCGCTTTGCCTGGAACCCGGACAAGGTGGTGCTGTTCGACAAGGGCAGCGGTGTCAG
CTTGCGTCACGCCGGATAG

Upstream 100 bases:

>100_bases
CGATTCTCGCGCTGGTCGTCACCGCTCTCAACAAGACAGCGCGATGATCAGCAGCTGACGCGAGCCGGCAGGTCGCGCTC
GCGCCGGTCCGCGCCGGTCG

Downstream 100 bases:

>100_bases
AGTGTCCGGTTACTTCGCCAAGTAGGTCTCGTAGGGCGTGTCGTTGATCAGCAGGATCACGCACTCCGTGTCGGACAGGC
AGGCGTCGTCATGCATCTCA

Product: sugar ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MCVALSTLTPSSSGLTGGPDAEIKDRVDRAARTLRIEHLLDRKTDRLSGGEMQRVSIGRAIVRKPRVLLMDEPLSALDAK
LREALRAELKNLQMQLGATFLFVTHDQIEAMSMGDKVGVLNHGRIVQTGTPHEIYNNPRDTYVASFVGSPPMNLIDGRLV
NGRAVMAPLNFELPFSGGAKASGATDGRPLVFGIRPEDVYLESGAPIEARVHDVENHGVEKILTLRVGDTTLRATVPART
DVAIEQPVRFAWNPDKVVLFDKGSGVSLRHAG

Sequences:

>Translated_272_residues
MCVALSTLTPSSSGLTGGPDAEIKDRVDRAARTLRIEHLLDRKTDRLSGGEMQRVSIGRAIVRKPRVLLMDEPLSALDAK
LREALRAELKNLQMQLGATFLFVTHDQIEAMSMGDKVGVLNHGRIVQTGTPHEIYNNPRDTYVASFVGSPPMNLIDGRLV
NGRAVMAPLNFELPFSGGAKASGATDGRPLVFGIRPEDVYLESGAPIEARVHDVENHGVEKILTLRVGDTTLRATVPART
DVAIEQPVRFAWNPDKVVLFDKGSGVSLRHAG
>Mature_272_residues
MCVALSTLTPSSSGLTGGPDAEIKDRVDRAARTLRIEHLLDRKTDRLSGGEMQRVSIGRAIVRKPRVLLMDEPLSALDAK
LREALRAELKNLQMQLGATFLFVTHDQIEAMSMGDKVGVLNHGRIVQTGTPHEIYNNPRDTYVASFVGSPPMNLIDGRLV
NGRAVMAPLNFELPFSGGAKASGATDGRPLVFGIRPEDVYLESGAPIEARVHDVENHGVEKILTLRVGDTTLRATVPART
DVAIEQPVRFAWNPDKVVLFDKGSGVSLRHAG

Specific function: Probably part of a binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for energy coupling to the transport system [H]

COG id: COG3839

COG function: function code G; ABC-type sugar transport systems, ATPase components

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI255708477, Length=131, Percent_Identity=36.6412213740458, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI148612844, Length=131, Percent_Identity=36.6412213740458, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI42490749, Length=113, Percent_Identity=34.5132743362832, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87082267, Length=186, Percent_Identity=50, Blast_Score=169, Evalue=1e-43,
Organism=Escherichia coli, GI1790467, Length=258, Percent_Identity=37.5968992248062, Blast_Score=158, Evalue=3e-40,
Organism=Escherichia coli, GI1787370, Length=195, Percent_Identity=44.6153846153846, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1787712, Length=189, Percent_Identity=42.3280423280423, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI87081709, Length=187, Percent_Identity=39.572192513369, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI87081791, Length=192, Percent_Identity=36.9791666666667, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1788761, Length=161, Percent_Identity=37.2670807453416, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1789032, Length=132, Percent_Identity=40.9090909090909, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1788450, Length=146, Percent_Identity=38.3561643835616, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789962, Length=118, Percent_Identity=37.2881355932203, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1787500, Length=134, Percent_Identity=32.089552238806, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1786398, Length=135, Percent_Identity=32.5925925925926, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI145693107, Length=113, Percent_Identity=34.5132743362832, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789672, Length=131, Percent_Identity=31.2977099236641, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787758, Length=112, Percent_Identity=33.9285714285714, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789963, Length=112, Percent_Identity=33.9285714285714, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788506, Length=133, Percent_Identity=32.3308270676692, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789891, Length=108, Percent_Identity=36.1111111111111, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787164, Length=79, Percent_Identity=45.5696202531646, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789864, Length=118, Percent_Identity=33.0508474576271, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787029, Length=101, Percent_Identity=36.6336633663366, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788644, Length=102, Percent_Identity=41.1764705882353, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786253, Length=117, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788165, Length=123, Percent_Identity=32.520325203252, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788225, Length=102, Percent_Identity=36.2745098039216, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786319, Length=152, Percent_Identity=28.2894736842105, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI48994883, Length=105, Percent_Identity=29.5238095238095, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786563, Length=105, Percent_Identity=37.1428571428571, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI48994997, Length=107, Percent_Identity=31.7757009345794, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786803, Length=113, Percent_Identity=33.6283185840708, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI87081834, Length=86, Percent_Identity=40.6976744186046, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787759, Length=113, Percent_Identity=29.2035398230088, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790739, Length=120, Percent_Identity=34.1666666666667, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI48994943, Length=116, Percent_Identity=29.3103448275862, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786345, Length=111, Percent_Identity=34.2342342342342, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787089, Length=104, Percent_Identity=34.6153846153846, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1786981, Length=121, Percent_Identity=38.0165289256198, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1789593, Length=114, Percent_Identity=29.8245614035088, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71992290, Length=111, Percent_Identity=35.1351351351351, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI115534520, Length=89, Percent_Identity=39.3258426966292, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17569143, Length=131, Percent_Identity=32.0610687022901, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17511077, Length=89, Percent_Identity=39.3258426966292, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17569145, Length=131, Percent_Identity=29.7709923664122, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6324985, Length=93, Percent_Identity=35.4838709677419, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24649703, Length=97, Percent_Identity=38.1443298969072, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI85726357, Length=96, Percent_Identity=35.4166666666667, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR008995
- InterPro:   IPR013611 [H]

Pfam domain/function: PF00005 ABC_tran; PF08402 TOBE_2 [H]

EC number: NA

Molecular weight: Translated: 29546; Mature: 29546

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCVALSTLTPSSSGLTGGPDAEIKDRVDRAARTLRIEHLLDRKTDRLSGGEMQRVSIGRA
CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHH
IVRKPRVLLMDEPLSALDAKLREALRAELKNLQMQLGATFLFVTHDQIEAMSMGDKVGVL
HHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCHHHHHCCCEEEEE
NHGRIVQTGTPHEIYNNPRDTYVASFVGSPPMNLIDGRLVNGRAVMAPLNFELPFSGGAK
ECCEEEECCCCHHHHCCCCHHEEEEECCCCCCHHHCCEEECCEEEEEEEEEECCCCCCCC
ASGATDGRPLVFGIRPEDVYLESGAPIEARVHDVENHGVEKILTLRVGDTTLRATVPART
CCCCCCCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCEEEEEEEECCEEEEEECCCCC
DVAIEQPVRFAWNPDKVVLFDKGSGVSLRHAG
CEEECCCEEEEECCCEEEEEECCCCEEEEECC
>Mature Secondary Structure
MCVALSTLTPSSSGLTGGPDAEIKDRVDRAARTLRIEHLLDRKTDRLSGGEMQRVSIGRA
CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHH
IVRKPRVLLMDEPLSALDAKLREALRAELKNLQMQLGATFLFVTHDQIEAMSMGDKVGVL
HHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCHHHHHCCCEEEEE
NHGRIVQTGTPHEIYNNPRDTYVASFVGSPPMNLIDGRLVNGRAVMAPLNFELPFSGGAK
ECCEEEECCCCHHHHCCCCHHEEEEECCCCCCHHHCCEEECCEEEEEEEEEECCCCCCCC
ASGATDGRPLVFGIRPEDVYLESGAPIEARVHDVENHGVEKILTLRVGDTTLRATVPART
CCCCCCCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCEEEEEEEECCEEEEEECCCCC
DVAIEQPVRFAWNPDKVVLFDKGSGVSLRHAG
CEEECCCEEEEECCCEEEEEECCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]