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The map label for this gene is yqhC [C]

Identifier: 13472927

GI number: 13472927

Start: 2713946

End: 2714917

Strand: Direct

Name: yqhC [C]

Synonym: mlr3376

Alternate gene names: 13472927

Gene position: 2713946-2714917 (Clockwise)

Preceding gene: 13472926

Following gene: 13472928

Centisome position: 38.57

GC content: 65.53

Gene sequence:

>972_bases
ATGGATTTCACATCATCCGAGAGTGTTTCGCCGGCTTCAGGCGGTCCGCTGACCGACATGCTGCGAGGATTGCGGCTTGA
TGGCGTCGACTATGGCCGCTGCGAACTTGGCGAGCCGTGGGCGGTGCTCTTTCCAGCCCAGCAGGCGGCGCGTTTCCACT
TCATCGGCCGGCACCGATGCTGGCTGTTTTCGCCATCCCGGCAATGGCTGGAGCTGAAAGCCGGCGATGCGCTGCTGTTG
CCGCGTGGCGCCGAGCACATCCTTGCCAGTGCGCCGGACGTCCATGCCGTGCCGATCGAAAGCTACAGCATCGAGCCTTT
GCAGGACAATGTCTACGCCGTCTCGAACGGCGGCCACGGCGCGAAAACCCTGCTGTTTTGCGGCAGCATGCACTTCAATC
TGGGCGGATCGCATCCTGTGCTCGCCATGATGCCGGACATGATGCGCGCCCGCGACTTGATGGCGGACGAACCGGGCATT
CCGCACCTTCTGGAAGCCATGGCCAGCGAGGTGACCGGCAATCGCGCCGGCTCGGGCGGCATACTGGCGCGGCTGGCCGA
CGTATTGGCCGCAAGCATTATCCGTTCATGGGTGGAGAACGGTGGCGACGGCACCACCGGCTGGACCGCGGCGATCAAGG
ATCGCGACGTCGGCCGCGTGCTGGCGGCCATTCATCGCCAGCCCGATCGGAACTGGACCGTCGAAGCCCTCGCCCGCGAA
ATGGGTGCCTCGCGCTCGGCCTTCGCCGAACGGTTCACGACAATCGTCGGCGAAACGCCGGCGCGATATGTCGCCCGGCT
GCGCATGCACCAGGCGCGGCAGTGGCTGATCGAAGACCGGATGCGGGTATCCGTGGTGGCCGCCAGACTGGGCTACGAGT
CCGAGGCTTCGTTCAGCCGGGCGTTCAAGCGGATCGTCGGCACGGCGCCCAGCCATTTGCGCACCGTCAACGGCACCTCC
GAAGAACGCTGA

Upstream 100 bases:

>100_bases
CACCCAGCCATCTGCGCGCCGAGGAGCAGGCTGACATCCGCCAGGCCGGGTAGCGTATCTCGGCCGTGACGGACTGGCGA
TTCCACGCTAGAACCCGGGC

Downstream 100 bases:

>100_bases
GGCCGCACGGAGCCTGCCGTCTTGGATTGCTGGATGAAATCCCAAGTCTTCCGGACGCCGTGTCATTGCCGGGCCGACTG
CATGCAATAGCTTGCCGTTG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MDFTSSESVSPASGGPLTDMLRGLRLDGVDYGRCELGEPWAVLFPAQQAARFHFIGRHRCWLFSPSRQWLELKAGDALLL
PRGAEHILASAPDVHAVPIESYSIEPLQDNVYAVSNGGHGAKTLLFCGSMHFNLGGSHPVLAMMPDMMRARDLMADEPGI
PHLLEAMASEVTGNRAGSGGILARLADVLAASIIRSWVENGGDGTTGWTAAIKDRDVGRVLAAIHRQPDRNWTVEALARE
MGASRSAFAERFTTIVGETPARYVARLRMHQARQWLIEDRMRVSVVAARLGYESEASFSRAFKRIVGTAPSHLRTVNGTS
EER

Sequences:

>Translated_323_residues
MDFTSSESVSPASGGPLTDMLRGLRLDGVDYGRCELGEPWAVLFPAQQAARFHFIGRHRCWLFSPSRQWLELKAGDALLL
PRGAEHILASAPDVHAVPIESYSIEPLQDNVYAVSNGGHGAKTLLFCGSMHFNLGGSHPVLAMMPDMMRARDLMADEPGI
PHLLEAMASEVTGNRAGSGGILARLADVLAASIIRSWVENGGDGTTGWTAAIKDRDVGRVLAAIHRQPDRNWTVEALARE
MGASRSAFAERFTTIVGETPARYVARLRMHQARQWLIEDRMRVSVVAARLGYESEASFSRAFKRIVGTAPSHLRTVNGTS
EER
>Mature_323_residues
MDFTSSESVSPASGGPLTDMLRGLRLDGVDYGRCELGEPWAVLFPAQQAARFHFIGRHRCWLFSPSRQWLELKAGDALLL
PRGAEHILASAPDVHAVPIESYSIEPLQDNVYAVSNGGHGAKTLLFCGSMHFNLGGSHPVLAMMPDMMRARDLMADEPGI
PHLLEAMASEVTGNRAGSGGILARLADVLAASIIRSWVENGGDGTTGWTAAIKDRDVGRVLAAIHRQPDRNWTVEALARE
MGASRSAFAERFTTIVGETPARYVARLRMHQARQWLIEDRMRVSVVAARLGYESEASFSRAFKRIVGTAPSHLRTVNGTS
EER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=185, Percent_Identity=33.5135135135135, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786496, Length=296, Percent_Identity=23.9864864864865, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35272; Mature: 35272

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFTSSESVSPASGGPLTDMLRGLRLDGVDYGRCELGEPWAVLFPAQQAARFHFIGRHRC
CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHEECCCEE
WLFSPSRQWLELKAGDALLLPRGAEHILASAPDVHAVPIESYSIEPLQDNVYAVSNGGHG
EEECCCCCEEEEECCCEEECCCCHHHHHCCCCCCEEEECCCCCCCCCCCCEEEEECCCCC
AKTLLFCGSMHFNLGGSHPVLAMMPDMMRARDLMADEPGIPHLLEAMASEVTGNRAGSGG
CEEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCH
ILARLADVLAASIIRSWVENGGDGTTGWTAAIKDRDVGRVLAAIHRQPDRNWTVEALARE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHH
MGASRSAFAERFTTIVGETPARYVARLRMHQARQWLIEDRMRVSVVAARLGYESEASFSR
HCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AFKRIVGTAPSHLRTVNGTSEER
HHHHHHCCCHHHEEECCCCCCCC
>Mature Secondary Structure
MDFTSSESVSPASGGPLTDMLRGLRLDGVDYGRCELGEPWAVLFPAQQAARFHFIGRHRC
CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHEECCCEE
WLFSPSRQWLELKAGDALLLPRGAEHILASAPDVHAVPIESYSIEPLQDNVYAVSNGGHG
EEECCCCCEEEEECCCEEECCCCHHHHHCCCCCCEEEECCCCCCCCCCCCEEEEECCCCC
AKTLLFCGSMHFNLGGSHPVLAMMPDMMRARDLMADEPGIPHLLEAMASEVTGNRAGSGG
CEEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCH
ILARLADVLAASIIRSWVENGGDGTTGWTAAIKDRDVGRVLAAIHRQPDRNWTVEALARE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHH
MGASRSAFAERFTTIVGETPARYVARLRMHQARQWLIEDRMRVSVVAARLGYESEASFSR
HCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AFKRIVGTAPSHLRTVNGTSEER
HHHHHHCCCHHHEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]