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The map label for this gene is ybiO [H]

Identifier: 13472860

GI number: 13472860

Start: 2640121

End: 2642340

Strand: Reverse

Name: ybiO [H]

Synonym: mll3287

Alternate gene names: 13472860

Gene position: 2642340-2640121 (Counterclockwise)

Preceding gene: 13472862

Following gene: 13472857

Centisome position: 37.55

GC content: 59.01

Gene sequence:

>2220_bases
ATGTTTGCCCTGATTGCCAGGCCGCTCATCTTTGGGATCGCCCTCCTGTTGGCTGGCCCGGCACAGGCGCAGTCATCGGC
GACCGTCCCGCCCGAGAGAGTCAAGCAGCTGTTCGAGCTTCTCGACGATCCGTCAGTGAAGGCCTGGATGGCCGAACAGC
GAAATCAGGACGCCGGGTCGACGGCAGCGCCTGCCGGTGCGGAAGCTTCGCCGGCCAACGCATCGTCCGACGCCGTGGCC
GCACCCGGCCAGATGAATATGATGGCATCCTCGACGCTCGATCGGATCAAGCATCATATCGAAAGAATCGTGCGAACTTT
GCCCTTGTTGCCAGGCCAGTTCGCACGCGTTCGGGCACAGACCATGGAGGATATGTCCAGCAAGGGGCCTGTCGGCGTAT
TGGTGCTGATCGCGATATTCATCGCTGTCGGCGTGGCGCTCACCTGGGCAACCTACAGGCTCACCCGTCCGTTTCGTCTT
TGGATCATCGCGCAGCCGAAGGATACGCCGATCGGGCGGGCCAAGAAGATCGGCGGCCGCACGCTTTATTCCAGCCTGCT
GATCGTCTCGTTCGCACTGGGCAGCGCCGGCGCGTTCATGCTGTTCGACTGGCCAATGCTCATCCGCGAGATTGTGCTGA
CATTTCTGATGGCCGCAGTCGTTACGGCGGGCGTGCGCATGTATCTCGCAGCCATGCTCGTCCCTTCCTTCATGCACGTC
GAGAACGCCGTCGAGGTCCGTGCCTTGCCGATCACCAACGAAACGGCTGACCATTGGTTCTATTGGCTACCGCGGATTGT
CGGCGTCTTCGCCTTCTTCGCCGCCGCCTTTAACCTCTTGCCGGGTCTCGGTATCGACCAGGACGGAATGATGGTCCTGT
CTCTGGGCGCCGATTTCGTGATGCTGTTTCTGTGGCTGCTTGCCATTTGGCGTCGGCCAAGAACACGGCGAGACGACGGA
CACGGTCACACGGCAGCGACATGGCTATTGACTGCTTATTTCGTCGTTCTGTTCCTGGAACGCATCGCCGGCTTATATAC
ATGGTTCTGGTTTACCTTCGCTGCATTCGTCCTGCCCTTGGCAATCGTGCTGACGCAGCGCGGGGTTAATTTCGTCCTGC
GGCCGGGTTCGGAAGATGTTGGCCGGCCGACGATCCCGGCGGTGACGATCGCAGTCATCGATCGCGGTATCCGAATGATA
TTGATCCTGGCGGCGGCATACCTTCTCGCGCGTGTCTGGGGTCTGGACATGCAATCCATGCGGGACCGCGATACGACGAC
CATGCTGATATTGAGCGGCTTGATCAATGTCGTGGTCATTGCGCTTGCCGCCGATTTCGGCTGGTCGATCATCAAAGCCT
TGATCGAACGAAAGCTGGGCATCCACACACCGCATGCGGTGATCGGCGAGGAGGGCATCCTGACCCTCGATCCGCATCAG
GCGCGGCTGCACACGCTGTTGCCGATCATCCAAAACATTCTGCTCGCGGTGATCATCGTGATGGCGGTGCTGATGATGCT
CGCCTCAATTGGAATCCAGATCGGCCCGCTGATCGCCGGCGCTGGCGTCGTCGGCGTCGCCGTGGGTTTTGGTGCACAAA
CCATCGTCAAGGATGTGATCTCAGGTGTGTTTTATCTGCTCGACGATGCTTTTCGTGTCGGGGAATATATTTCATCGGGC
AGCTACAGGGGTACGGTGGAGAGCTTTTCGCTGCGCTCGGTTAAGCTGCGCCATCATCGTGGCCCGCTGTTCACGATACC
TTTCGGTGAACTCGGGGCAGTCCAGAACCAGAGCCGCGACTGGGTCACCGACAAGTTCAACGTCACCGTTGGCTATGACA
CCGATATCGAACTCGCGCGCAAGCTGATCAAGCGGATCGGCCTCGAACTGGCGGAAGATCCAGAATTCAAACACTGGGTG
ATCGAACCGATCAAGATGCAGGGCGTTCAGGAGTTCGGCGAGTACGGCATCGTATTGAGGGTCAAGGTCACAACCAGACC
GGGAGGCGCCTTCAGTATGAAAGGCAGATTCTTCCTACGCCTCCGCCAAGCCTTCAAGGAGCAGGGCATCGAACTCCCAT
TCCCCACCGTCCACATCCAGGGGATGCAGAACCCACATGAGGCAGAGAATGCGCCTTTGGAGATCACACCCGAGCTAAGA
ATGGCCGTCGCGCAGTCGCATACCAATCGGCGGAGAAAAAAAGCTGGCACAACGGAGTAA

Upstream 100 bases:

>100_bases
GACTTTCTGGTGGTACTGCGCGCAATTTTTGATTAGGACCAGCGAGGTAGGGTGCCAGGGCTCTGTCGCCCCGGCACGAC
GCCCCGGAGATCTGACTGCG

Downstream 100 bases:

>100_bases
GAAAGCTGTGACACCTGTCGGTCACCGCGCGACTTTTCCTTGGGTCATGCAGAGCGATGCCCAAGTATAGGTTGGGCATC
GAAACCTCTCTGCTCGATCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 739; Mature: 739

Protein sequence:

>739_residues
MFALIARPLIFGIALLLAGPAQAQSSATVPPERVKQLFELLDDPSVKAWMAEQRNQDAGSTAAPAGAEASPANASSDAVA
APGQMNMMASSTLDRIKHHIERIVRTLPLLPGQFARVRAQTMEDMSSKGPVGVLVLIAIFIAVGVALTWATYRLTRPFRL
WIIAQPKDTPIGRAKKIGGRTLYSSLLIVSFALGSAGAFMLFDWPMLIREIVLTFLMAAVVTAGVRMYLAAMLVPSFMHV
ENAVEVRALPITNETADHWFYWLPRIVGVFAFFAAAFNLLPGLGIDQDGMMVLSLGADFVMLFLWLLAIWRRPRTRRDDG
HGHTAATWLLTAYFVVLFLERIAGLYTWFWFTFAAFVLPLAIVLTQRGVNFVLRPGSEDVGRPTIPAVTIAVIDRGIRMI
LILAAAYLLARVWGLDMQSMRDRDTTTMLILSGLINVVVIALAADFGWSIIKALIERKLGIHTPHAVIGEEGILTLDPHQ
ARLHTLLPIIQNILLAVIIVMAVLMMLASIGIQIGPLIAGAGVVGVAVGFGAQTIVKDVISGVFYLLDDAFRVGEYISSG
SYRGTVESFSLRSVKLRHHRGPLFTIPFGELGAVQNQSRDWVTDKFNVTVGYDTDIELARKLIKRIGLELAEDPEFKHWV
IEPIKMQGVQEFGEYGIVLRVKVTTRPGGAFSMKGRFFLRLRQAFKEQGIELPFPTVHIQGMQNPHEAENAPLEITPELR
MAVAQSHTNRRRKKAGTTE

Sequences:

>Translated_739_residues
MFALIARPLIFGIALLLAGPAQAQSSATVPPERVKQLFELLDDPSVKAWMAEQRNQDAGSTAAPAGAEASPANASSDAVA
APGQMNMMASSTLDRIKHHIERIVRTLPLLPGQFARVRAQTMEDMSSKGPVGVLVLIAIFIAVGVALTWATYRLTRPFRL
WIIAQPKDTPIGRAKKIGGRTLYSSLLIVSFALGSAGAFMLFDWPMLIREIVLTFLMAAVVTAGVRMYLAAMLVPSFMHV
ENAVEVRALPITNETADHWFYWLPRIVGVFAFFAAAFNLLPGLGIDQDGMMVLSLGADFVMLFLWLLAIWRRPRTRRDDG
HGHTAATWLLTAYFVVLFLERIAGLYTWFWFTFAAFVLPLAIVLTQRGVNFVLRPGSEDVGRPTIPAVTIAVIDRGIRMI
LILAAAYLLARVWGLDMQSMRDRDTTTMLILSGLINVVVIALAADFGWSIIKALIERKLGIHTPHAVIGEEGILTLDPHQ
ARLHTLLPIIQNILLAVIIVMAVLMMLASIGIQIGPLIAGAGVVGVAVGFGAQTIVKDVISGVFYLLDDAFRVGEYISSG
SYRGTVESFSLRSVKLRHHRGPLFTIPFGELGAVQNQSRDWVTDKFNVTVGYDTDIELARKLIKRIGLELAEDPEFKHWV
IEPIKMQGVQEFGEYGIVLRVKVTTRPGGAFSMKGRFFLRLRQAFKEQGIELPFPTVHIQGMQNPHEAENAPLEITPELR
MAVAQSHTNRRRKKAGTTE
>Mature_739_residues
MFALIARPLIFGIALLLAGPAQAQSSATVPPERVKQLFELLDDPSVKAWMAEQRNQDAGSTAAPAGAEASPANASSDAVA
APGQMNMMASSTLDRIKHHIERIVRTLPLLPGQFARVRAQTMEDMSSKGPVGVLVLIAIFIAVGVALTWATYRLTRPFRL
WIIAQPKDTPIGRAKKIGGRTLYSSLLIVSFALGSAGAFMLFDWPMLIREIVLTFLMAAVVTAGVRMYLAAMLVPSFMHV
ENAVEVRALPITNETADHWFYWLPRIVGVFAFFAAAFNLLPGLGIDQDGMMVLSLGADFVMLFLWLLAIWRRPRTRRDDG
HGHTAATWLLTAYFVVLFLERIAGLYTWFWFTFAAFVLPLAIVLTQRGVNFVLRPGSEDVGRPTIPAVTIAVIDRGIRMI
LILAAAYLLARVWGLDMQSMRDRDTTTMLILSGLINVVVIALAADFGWSIIKALIERKLGIHTPHAVIGEEGILTLDPHQ
ARLHTLLPIIQNILLAVIIVMAVLMMLASIGIQIGPLIAGAGVVGVAVGFGAQTIVKDVISGVFYLLDDAFRVGEYISSG
SYRGTVESFSLRSVKLRHHRGPLFTIPFGELGAVQNQSRDWVTDKFNVTVGYDTDIELARKLIKRIGLELAEDPEFKHWV
IEPIKMQGVQEFGEYGIVLRVKVTTRPGGAFSMKGRFFLRLRQAFKEQGIELPFPTVHIQGMQNPHEAENAPLEITPELR
MAVAQSHTNRRRKKAGTTE

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=513, Percent_Identity=24.9512670565302, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1789291, Length=206, Percent_Identity=28.1553398058252, Blast_Score=81, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 81425; Mature: 81425

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFALIARPLIFGIALLLAGPAQAQSSATVPPERVKQLFELLDDPSVKAWMAEQRNQDAGS
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC
TAAPAGAEASPANASSDAVAAPGQMNMMASSTLDRIKHHIERIVRTLPLLPGQFARVRAQ
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
TMEDMSSKGPVGVLVLIAIFIAVGVALTWATYRLTRPFRLWIIAQPKDTPIGRAKKIGGR
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHCCCH
TLYSSLLIVSFALGSAGAFMLFDWPMLIREIVLTFLMAAVVTAGVRMYLAAMLVPSFMHV
HHHHHHHHHHHHHCCCCEEHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENAVEVRALPITNETADHWFYWLPRIVGVFAFFAAAFNLLPGLGIDQDGMMVLSLGADFV
HCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHH
MLFLWLLAIWRRPRTRRDDGHGHTAATWLLTAYFVVLFLERIAGLYTWFWFTFAAFVLPL
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIVLTQRGVNFVLRPGSEDVGRPTIPAVTIAVIDRGIRMILILAAAYLLARVWGLDMQSM
HHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
RDRDTTTMLILSGLINVVVIALAADFGWSIIKALIERKLGIHTPHAVIGEEGILTLDPHQ
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHCCCCCEEEECCHH
ARLHTLLPIIQNILLAVIIVMAVLMMLASIGIQIGPLIAGAGVVGVAVGFGAQTIVKDVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHCCHHHHHHHHH
SGVFYLLDDAFRVGEYISSGSYRGTVESFSLRSVKLRHHRGPLFTIPFGELGAVQNQSRD
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHCCCCCCCCC
WVTDKFNVTVGYDTDIELARKLIKRIGLELAEDPEFKHWVIEPIKMQGVQEFGEYGIVLR
CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
VKVTTRPGGAFSMKGRFFLRLRQAFKEQGIELPFPTVHIQGMQNPHEAENAPLEITPELR
EEEEECCCCCEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEECHHHH
MAVAQSHTNRRRKKAGTTE
HHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MFALIARPLIFGIALLLAGPAQAQSSATVPPERVKQLFELLDDPSVKAWMAEQRNQDAGS
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC
TAAPAGAEASPANASSDAVAAPGQMNMMASSTLDRIKHHIERIVRTLPLLPGQFARVRAQ
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
TMEDMSSKGPVGVLVLIAIFIAVGVALTWATYRLTRPFRLWIIAQPKDTPIGRAKKIGGR
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHCCCH
TLYSSLLIVSFALGSAGAFMLFDWPMLIREIVLTFLMAAVVTAGVRMYLAAMLVPSFMHV
HHHHHHHHHHHHHCCCCEEHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ENAVEVRALPITNETADHWFYWLPRIVGVFAFFAAAFNLLPGLGIDQDGMMVLSLGADFV
HCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHH
MLFLWLLAIWRRPRTRRDDGHGHTAATWLLTAYFVVLFLERIAGLYTWFWFTFAAFVLPL
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIVLTQRGVNFVLRPGSEDVGRPTIPAVTIAVIDRGIRMILILAAAYLLARVWGLDMQSM
HHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
RDRDTTTMLILSGLINVVVIALAADFGWSIIKALIERKLGIHTPHAVIGEEGILTLDPHQ
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHCCCCCEEEECCHH
ARLHTLLPIIQNILLAVIIVMAVLMMLASIGIQIGPLIAGAGVVGVAVGFGAQTIVKDVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHCCHHHHHHHHH
SGVFYLLDDAFRVGEYISSGSYRGTVESFSLRSVKLRHHRGPLFTIPFGELGAVQNQSRD
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHCCCCCCCCC
WVTDKFNVTVGYDTDIELARKLIKRIGLELAEDPEFKHWVIEPIKMQGVQEFGEYGIVLR
CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
VKVTTRPGGAFSMKGRFFLRLRQAFKEQGIELPFPTVHIQGMQNPHEAENAPLEITPELR
EEEEECCCCCEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEECHHHH
MAVAQSHTNRRRKKAGTTE
HHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]