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The map label for this gene is ihfB [H]

Identifier: 13472793

GI number: 13472793

Start: 2562507

End: 2562791

Strand: Direct

Name: ihfB [H]

Synonym: msr3202

Alternate gene names: 13472793

Gene position: 2562507-2562791 (Clockwise)

Preceding gene: 13472792

Following gene: 13472794

Centisome position: 36.42

GC content: 59.3

Gene sequence:

>285_bases
ATGATCAAGTCCGAACTTGTGCAGATTATTGCCACGCGCAATCCGCATCTTTTCCTGCGCGACGTCGAAAACATCGTCGG
CGCGATCTTCGACGAGATCACCGATGCTCTTGCCGAAGGCAACCGGGTCGAACTACGCGGTTTCGGCGCTTTTTCGGTGA
AAAACCGTCCCGCCCGCACCGGCCGCAACCCGCGCACCGGTGAATCCGTCGAGGTCGAGGAGAAGTGGGTGCCGTTCTTC
AAGACCGGCAAGGAACTGCGCGAAAGGCTGAACGGCGGCAAGTAG

Upstream 100 bases:

>100_bases
TTTCTGTCTGGCACCCTTGAGCGCCGTTTGGAACAGCTGAAAAAGCCAATAAAATCATCCTCATAATTTCGACCGAACTG
CTTTCACGGGGACCCGTCTG

Downstream 100 bases:

>100_bases
GCGCGGCTTCAGCGCCAACTTCCGACGGAAAACATAATGCTCAATCGTTTCATGCTCATCGTGGTCTTCGTGCCCCTGGC
GATCATCCTGATCGCGCTGG

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MIKSELVQIIATRNPHLFLRDVENIVGAIFDEITDALAEGNRVELRGFGAFSVKNRPARTGRNPRTGESVEVEEKWVPFF
KTGKELRERLNGGK

Sequences:

>Translated_94_residues
MIKSELVQIIATRNPHLFLRDVENIVGAIFDEITDALAEGNRVELRGFGAFSVKNRPARTGRNPRTGESVEVEEKWVPFF
KTGKELRERLNGGK
>Mature_94_residues
MIKSELVQIIATRNPHLFLRDVENIVGAIFDEITDALAEGNRVELRGFGAFSVKNRPARTGRNPRTGESVEVEEKWVPFF
KTGKELRERLNGGK

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=50.5494505494505, Blast_Score=102, Evalue=5e-24,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=40.6593406593407, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1790433, Length=88, Percent_Identity=37.5, Blast_Score=65, Evalue=7e-13,
Organism=Escherichia coli, GI1788005, Length=71, Percent_Identity=39.4366197183099, Blast_Score=60, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10624; Mature: 10624

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKSELVQIIATRNPHLFLRDVENIVGAIFDEITDALAEGNRVELRGFGAFSVKNRPART
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECCCCCCCCC
GRNPRTGESVEVEEKWVPFFKTGKELRERLNGGK
CCCCCCCCCCCCHHHCCCHHHCCHHHHHHHCCCC
>Mature Secondary Structure
MIKSELVQIIATRNPHLFLRDVENIVGAIFDEITDALAEGNRVELRGFGAFSVKNRPART
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECCCCCCCCC
GRNPRTGESVEVEEKWVPFFKTGKELRERLNGGK
CCCCCCCCCCCCHHHCCCHHHCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA