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The map label for this gene is 13472540

Identifier: 13472540

GI number: 13472540

Start: 2307271

End: 2308545

Strand: Reverse

Name: 13472540

Synonym: mll2869

Alternate gene names: NA

Gene position: 2308545-2307271 (Counterclockwise)

Preceding gene: 13472541

Following gene: 13472539

Centisome position: 32.81

GC content: 67.29

Gene sequence:

>1275_bases
ATGACCGAACTTGCCTGGATCAGCTCCGCGATCAGCGCCGCCCGCCCGCAGGCAATGGGAGCGCTGCTGCGCTATTTCCG
CGATCTCGATACGGCGGAGGAAGCTTTCCAGGATGCCTGTCTCAGGGCCTTGAAGAACTGGCCGCAGAACGGGCCGCCGC
GCGACCCGGCGGCCTGGCTGATCTTCGTCGGCCGCAACAGCGGCATCGACGCGGTGCGCAAGCGCGCCAAGCAGGCGCCG
ATGCCGGAAGAGGACCAGATCTCCGATCTGGAGGATGCCGAGAGCGACATCGCCGAGCGGCTGGACGGCGCGCATTATCG
CGACGACATATTGCGGCTGCTCTTCATCTGCTGCCATCCGGACCTTCCGGCAACGCAGCAGATCGCGGTCGCGCTGCGCA
TCGTCTCCGGTCTCAGCGTCAAGCAGATCGCGCGCGCCTTCCTGGTCGGCGAAAGCGCCATGGAGCAGCGCATCACCCGC
GCCAAGGCGCGCATCGCCGACGCCGGCGTGCCGTTCGAGACGCCGGGCGCGGTCGAACGCTCCGAGCGGCTCGCCGCGGT
GGCGGCGATGGTCTACCTGATCTTCAACGAAGGCTATTCGACCAACAGCGGCGAGGCGCCGGCCCGCGCGCCGCTGTGCG
AGGAAGCGATCCGGCTCGCCCGGCTGTTGCTGCGGCTGTTCCAGACCGAGCCGGAGATCATGGGGCTGACGGCGCTGCTT
TTGCTGCAGCATGCGCGCGCCCCGGCCCGTTTCGACGAAGACGGCGAGATCGTGCTGCTCGAGGACCAGGATCGCGGCCT
GTGGAGCCGCAAGATGATCGACGAGGGGCTGGCGCTTGTCGACAAGGCGTTGCGCCATCGCAAGCCCGGTCCCTACCAGG
TGCAGGCGGCAATCGCTGCTTTGCATGCCCGGGCAGAGAAGGCCGAGGACACCGACTGGGTGGAGATCGACCTCCTCTAC
GGGCTGCTCGAACAGATGCAGCCGTCGCCCGTCATCACGCTCAACCGCGCGGTGGCGGTCTCCAAGATACGCGGCCCGGA
GGCGGCGCTTGCCATGATCGAGCCGCTGGAAGAAAGGCTTTCCGGCTATTTCCACTTCTTCGGCCTCAAGGGCGGGCTGC
TGATGCAGCTCGACCGGGGTGAGGAGGCGCGGGTCGCCTTCGACCGCGCCATCGCGCTGGCCAACACGGCGGTGGAAGCG
GCCCATATCCGCATGCATATCGACCGTTTGATGAAAGACGGCGCCGTGCGCGTGCCGGCGAAAAAGGCCAACTGA

Upstream 100 bases:

>100_bases
AGGCCGTCGAATTCGCCCGTGAGCTGTCCGAAGTTAACCCGAGCGGCGGATCCTATGAGATCCGGCCGGTCTCGGTGTTC
AATCCCACCGGGGTTGCCGT

Downstream 100 bases:

>100_bases
GCCGCGTTTGCCCATCTGGCTCAATCGTGTCGCTCGGGCTTAGACCATGCTGGGGTGGCGATTTTCCCTTGAAACGAGTA
AGGCCACGCCATGACTGTGC

Product: ECF subfamily RNA polymerase sigma-70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 423

Protein sequence:

>424_residues
MTELAWISSAISAARPQAMGALLRYFRDLDTAEEAFQDACLRALKNWPQNGPPRDPAAWLIFVGRNSGIDAVRKRAKQAP
MPEEDQISDLEDAESDIAERLDGAHYRDDILRLLFICCHPDLPATQQIAVALRIVSGLSVKQIARAFLVGESAMEQRITR
AKARIADAGVPFETPGAVERSERLAAVAAMVYLIFNEGYSTNSGEAPARAPLCEEAIRLARLLLRLFQTEPEIMGLTALL
LLQHARAPARFDEDGEIVLLEDQDRGLWSRKMIDEGLALVDKALRHRKPGPYQVQAAIAALHARAEKAEDTDWVEIDLLY
GLLEQMQPSPVITLNRAVAVSKIRGPEAALAMIEPLEERLSGYFHFFGLKGGLLMQLDRGEEARVAFDRAIALANTAVEA
AHIRMHIDRLMKDGAVRVPAKKAN

Sequences:

>Translated_424_residues
MTELAWISSAISAARPQAMGALLRYFRDLDTAEEAFQDACLRALKNWPQNGPPRDPAAWLIFVGRNSGIDAVRKRAKQAP
MPEEDQISDLEDAESDIAERLDGAHYRDDILRLLFICCHPDLPATQQIAVALRIVSGLSVKQIARAFLVGESAMEQRITR
AKARIADAGVPFETPGAVERSERLAAVAAMVYLIFNEGYSTNSGEAPARAPLCEEAIRLARLLLRLFQTEPEIMGLTALL
LLQHARAPARFDEDGEIVLLEDQDRGLWSRKMIDEGLALVDKALRHRKPGPYQVQAAIAALHARAEKAEDTDWVEIDLLY
GLLEQMQPSPVITLNRAVAVSKIRGPEAALAMIEPLEERLSGYFHFFGLKGGLLMQLDRGEEARVAFDRAIALANTAVEA
AHIRMHIDRLMKDGAVRVPAKKAN
>Mature_423_residues
TELAWISSAISAARPQAMGALLRYFRDLDTAEEAFQDACLRALKNWPQNGPPRDPAAWLIFVGRNSGIDAVRKRAKQAPM
PEEDQISDLEDAESDIAERLDGAHYRDDILRLLFICCHPDLPATQQIAVALRIVSGLSVKQIARAFLVGESAMEQRITRA
KARIADAGVPFETPGAVERSERLAAVAAMVYLIFNEGYSTNSGEAPARAPLCEEAIRLARLLLRLFQTEPEIMGLTALLL
LQHARAPARFDEDGEIVLLEDQDRGLWSRKMIDEGLALVDKALRHRKPGPYQVQAAIAALHARAEKAEDTDWVEIDLLYG
LLEQMQPSPVITLNRAVAVSKIRGPEAALAMIEPLEERLSGYFHFFGLKGGLLMQLDRGEEARVAFDRAIALANTAVEAA
HIRMHIDRLMKDGAVRVPAKKAN

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 46863; Mature: 46731

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTELAWISSAISAARPQAMGALLRYFRDLDTAEEAFQDACLRALKNWPQNGPPRDPAAWL
CCCHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
IFVGRNSGIDAVRKRAKQAPMPEEDQISDLEDAESDIAERLDGAHYRDDILRLLFICCHP
EEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
DLPATQQIAVALRIVSGLSVKQIARAFLVGESAMEQRITRAKARIADAGVPFETPGAVER
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
SERLAAVAAMVYLIFNEGYSTNSGEAPARAPLCEEAIRLARLLLRLFQTEPEIMGLTALL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LLQHARAPARFDEDGEIVLLEDQDRGLWSRKMIDEGLALVDKALRHRKPGPYQVQAAIAA
HHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LHARAEKAEDTDWVEIDLLYGLLEQMQPSPVITLNRAVAVSKIRGPEAALAMIEPLEERL
HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHHH
SGYFHFFGLKGGLLMQLDRGEEARVAFDRAIALANTAVEAAHIRMHIDRLMKDGAVRVPA
HHHHHHEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCC
KKAN
CCCC
>Mature Secondary Structure 
TELAWISSAISAARPQAMGALLRYFRDLDTAEEAFQDACLRALKNWPQNGPPRDPAAWL
CCHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
IFVGRNSGIDAVRKRAKQAPMPEEDQISDLEDAESDIAERLDGAHYRDDILRLLFICCHP
EEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
DLPATQQIAVALRIVSGLSVKQIARAFLVGESAMEQRITRAKARIADAGVPFETPGAVER
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
SERLAAVAAMVYLIFNEGYSTNSGEAPARAPLCEEAIRLARLLLRLFQTEPEIMGLTALL
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LLQHARAPARFDEDGEIVLLEDQDRGLWSRKMIDEGLALVDKALRHRKPGPYQVQAAIAA
HHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
LHARAEKAEDTDWVEIDLLYGLLEQMQPSPVITLNRAVAVSKIRGPEAALAMIEPLEERL
HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHHH
SGYFHFFGLKGGLLMQLDRGEEARVAFDRAIALANTAVEAAHIRMHIDRLMKDGAVRVPA
HHHHHHEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCC
KKAN
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]