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The map label for this gene is ydhM [C]

Identifier: 13472506

GI number: 13472506

Start: 2264004

End: 2264585

Strand: Direct

Name: ydhM [C]

Synonym: mlr2831

Alternate gene names: 13472506

Gene position: 2264004-2264585 (Clockwise)

Preceding gene: 13472503

Following gene: 13472507

Centisome position: 32.18

GC content: 60.31

Gene sequence:

>582_bases
ATGATGCGCGTGAACCGAACTCAAGCCGCGGAAAACCGCGAGACCGTCATCAATGTGGCAAGCCGCCTTTTTCGCGAGCG
CGGCTTTGACGGCATTGGCCTCAAGGATCTGATGAAGGGTGCAGGACTGACGCAGGGCGCCTTTTACAAGCAATTCGAGT
CAAAGGAGGACTTGGCAGCGCAGGCGTCCAAGCGGGCGATGGAGAGCGCCACCCACCGTTGGTCGGACGCAACTGCGGCA
AACCCTGAGAATCCGCTCGAAGCAGTGATCTCCTTCTATCTCAGCATGGGCCATCGCGGAGAAAGGATGGACGGATGCCC
GATCGTGGCACTCGGTTCGGATGCCGCCAGACAGGGCCAGGACGTGAAAGCGTCGTTCGAAGCAGGCATCAACGAGCATC
TGGAGATCCTCGGCCGTTTCATTGCCGAGGCCAATGGCGAGCAGTCCAATAGCAAGGCCATGGCCATTCTCTCGACGATG
GTCGGCGCGGTGCTCCTCTCGCGGGTCGTCAATGACCACGACCTTGCGCAGGCTTTTCTGGATGCAGCGACCGATCAGGT
GCGCGAAGCAGTCGCCGCTTGA

Upstream 100 bases:

>100_bases
TAACGGTTCTCTTTTTCACGCTCGTCGCCCCATCTCAAATTAGATTGCGTTCGACTTCTATATCGATTATAGATTACGAA
CGCAATCGAAAAGGAGACCG

Downstream 100 bases:

>100_bases
ACGGCGTGGGCAGCGCTGTCGGCGCACCCAAGTGATAGGAGAATAGATGCGACGGATTGTTGTTACAGGCATGGGAGCGG
TCACGCCCCTAGCTGCCAAT

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator Tetr Family; Transcriptional Regulator Protein; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator TetR Family Protein; TetR-Family Transcriptional Regulator; TetR Family Regulatory Protein; HTH-Type Transcriptional Regulator; TetR Family Regulator; Transcription Regulator Protein; TetR Family Transcription Regulatory Protein; Transcriptional Regulatory Protein TetR Family; TetR/AcrR Family Transcriptional Regulator; Orf_Bo

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MMRVNRTQAAENRETVINVASRLFRERGFDGIGLKDLMKGAGLTQGAFYKQFESKEDLAAQASKRAMESATHRWSDATAA
NPENPLEAVISFYLSMGHRGERMDGCPIVALGSDAARQGQDVKASFEAGINEHLEILGRFIAEANGEQSNSKAMAILSTM
VGAVLLSRVVNDHDLAQAFLDAATDQVREAVAA

Sequences:

>Translated_193_residues
MMRVNRTQAAENRETVINVASRLFRERGFDGIGLKDLMKGAGLTQGAFYKQFESKEDLAAQASKRAMESATHRWSDATAA
NPENPLEAVISFYLSMGHRGERMDGCPIVALGSDAARQGQDVKASFEAGINEHLEILGRFIAEANGEQSNSKAMAILSTM
VGAVLLSRVVNDHDLAQAFLDAATDQVREAVAA
>Mature_193_residues
MMRVNRTQAAENRETVINVASRLFRERGFDGIGLKDLMKGAGLTQGAFYKQFESKEDLAAQASKRAMESATHRWSDATAA
NPENPLEAVISFYLSMGHRGERMDGCPIVALGSDAARQGQDVKASFEAGINEHLEILGRFIAEANGEQSNSKAMAILSTM
VGAVLLSRVVNDHDLAQAFLDAATDQVREAVAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20859; Mature: 20859

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRVNRTQAAENRETVINVASRLFRERGFDGIGLKDLMKGAGLTQGAFYKQFESKEDLAA
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHCCHHHHHH
QASKRAMESATHRWSDATAANPENPLEAVISFYLSMGHRGERMDGCPIVALGSDAARQGQ
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHCCC
DVKASFEAGINEHLEILGRFIAEANGEQSNSKAMAILSTMVGAVLLSRVVNDHDLAQAFL
CHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
DAATDQVREAVAA
HHHHHHHHHHHCC
>Mature Secondary Structure
MMRVNRTQAAENRETVINVASRLFRERGFDGIGLKDLMKGAGLTQGAFYKQFESKEDLAA
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHCCHHHHHH
QASKRAMESATHRWSDATAANPENPLEAVISFYLSMGHRGERMDGCPIVALGSDAARQGQ
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHCCC
DVKASFEAGINEHLEILGRFIAEANGEQSNSKAMAILSTMVGAVLLSRVVNDHDLAQAFL
CHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
DAATDQVREAVAA
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA