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The map label for this gene is yrbE [H]

Identifier: 13472504

GI number: 13472504

Start: 2261581

End: 2262540

Strand: Reverse

Name: yrbE [H]

Synonym: mll2825

Alternate gene names: 13472504

Gene position: 2262540-2261581 (Counterclockwise)

Preceding gene: 13472505

Following gene: 13472502

Centisome position: 32.16

GC content: 65.52

Gene sequence:

>960_bases
ATGAAGCCGCGCATTGCAGTCCTCGGTTGCGGATACTGGGGCAGCAACCATATCCGCACCCTCAAGGCGCTTGGCGCGCT
GCACGCGGTTTCCGACGCCAACCGGGCGCGTGCCGAAGGCTTTGCCAGCGAACAGGATTGCCTGGCGATCGAGCCGGACC
AACTGTTCGGTCGGGACGATATCGACGCCATCGTCATGGCCTTGCCGCCGCAGTACCATGCCGACCTTGCCGTACGCGCC
GTCGAGAGCGGCAAGGACGTGCTGGTGGAAAAGCCGATCGCGCTGACGGTGGCGGATGCCGAGCGCGCGGTCCAGGCGGC
CAAGGACAATGGGCGCGTCTTCATGGTCGGCCATGTCCTGCGTTTTCATCCCGCCTTCGAGACGCTGAAGGGGCTGATAG
ACAAGGGCGAGCTTGGCGAGGTCCGCTACATCCACTCGCACCGGCTTGGCCTCGGCAAGTTCCACACCGAGAACGATGCG
CTGTGGGATCTGGCGCCGCACGATCTGTCGATGATCCTGGCCATCACCGGCACCGAGCCGGTCGAGGTGCGCGGCGAGGG
TGCGGCACTCCTCGACAACCTGAGCGACTTCGCGCATCTGCACATGCGCTTTCCCAACGGCCTGCGCAGCCACCTCTTCA
CCTCGCGACTCAATCCCTATCGCGAGCGACGGTTGACCGTGGTCGGCACCAAGGCGATGGCGGTGTTCGACGATGTCGAG
CCTTGGGAGCGCAAGCTTGCCGTCTACCGCCATGCGGTCTGGCAGGACAGCGGCCAATGGGCCTTCACCACCAACGAGCC
CTCCTATGTCGCGGTCGCGCAAGGCATGCCGCTGACGCGCGAGCTGGAGCATTTCATCCACTGCATCGAGACGCGGGGCG
AGCCGCGCACCAGCGGCGAGGAAGCGATCAGGGTGCTGCGCATCCTGACGGCGGGCACGGTCACCCACACCAAGTCCTGA

Upstream 100 bases:

>100_bases
AAAAGCTTTGCCGCATGGACATTTGGTTGGAACCGCCGGGGTTGAGTTCGAAGGGGCACGTCGCTATGTCTCGGCCACGA
GTTTTTAGAGTTTGAAACAG

Downstream 100 bases:

>100_bases
GACCGTTTGGAAATTCTACTCTGGCGGCCATCCGATGGCGTTTTCTGCGCTTCCCCGTTCTACTGCGTGCAGTAGAACTG
AGCTCACGGACCCGAATGTC

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MKPRIAVLGCGYWGSNHIRTLKALGALHAVSDANRARAEGFASEQDCLAIEPDQLFGRDDIDAIVMALPPQYHADLAVRA
VESGKDVLVEKPIALTVADAERAVQAAKDNGRVFMVGHVLRFHPAFETLKGLIDKGELGEVRYIHSHRLGLGKFHTENDA
LWDLAPHDLSMILAITGTEPVEVRGEGAALLDNLSDFAHLHMRFPNGLRSHLFTSRLNPYRERRLTVVGTKAMAVFDDVE
PWERKLAVYRHAVWQDSGQWAFTTNEPSYVAVAQGMPLTRELEHFIHCIETRGEPRTSGEEAIRVLRILTAGTVTHTKS

Sequences:

>Translated_319_residues
MKPRIAVLGCGYWGSNHIRTLKALGALHAVSDANRARAEGFASEQDCLAIEPDQLFGRDDIDAIVMALPPQYHADLAVRA
VESGKDVLVEKPIALTVADAERAVQAAKDNGRVFMVGHVLRFHPAFETLKGLIDKGELGEVRYIHSHRLGLGKFHTENDA
LWDLAPHDLSMILAITGTEPVEVRGEGAALLDNLSDFAHLHMRFPNGLRSHLFTSRLNPYRERRLTVVGTKAMAVFDDVE
PWERKLAVYRHAVWQDSGQWAFTTNEPSYVAVAQGMPLTRELEHFIHCIETRGEPRTSGEEAIRVLRILTAGTVTHTKS
>Mature_319_residues
MKPRIAVLGCGYWGSNHIRTLKALGALHAVSDANRARAEGFASEQDCLAIEPDQLFGRDDIDAIVMALPPQYHADLAVRA
VESGKDVLVEKPIALTVADAERAVQAAKDNGRVFMVGHVLRFHPAFETLKGLIDKGELGEVRYIHSHRLGLGKFHTENDA
LWDLAPHDLSMILAITGTEPVEVRGEGAALLDNLSDFAHLHMRFPNGLRSHLFTSRLNPYRERRLTVVGTKAMAVFDDVE
PWERKLAVYRHAVWQDSGQWAFTTNEPSYVAVAQGMPLTRELEHFIHCIETRGEPRTSGEEAIRVLRILTAGTVTHTKS

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=262, Percent_Identity=30.5343511450382, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87082405, Length=248, Percent_Identity=25, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789848, Length=135, Percent_Identity=30.3703703703704, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 35434; Mature: 35434

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS00435 PEROXIDASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPRIAVLGCGYWGSNHIRTLKALGALHAVSDANRARAEGFASEQDCLAIEPDQLFGRDD
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCEEECHHHHCCCCC
IDAIVMALPPQYHADLAVRAVESGKDVLVEKPIALTVADAERAVQAAKDNGRVFMVGHVL
CCEEEEECCCCCCCCCEEEEHHCCCEEEEECCEEEEECCHHHHHHHHCCCCCEEEEEHHH
RFHPAFETLKGLIDKGELGEVRYIHSHRLGLGKFHTENDALWDLAPHDLSMILAITGTEP
HHCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEECCCCCEEEECCCCEEEEEEEECCCC
VEVRGEGAALLDNLSDFAHLHMRFPNGLRSHLFTSRLNPYRERRLTVVGTKAMAVFDDVE
EEECCCCHHHHHHHHHHHHEEEECCCHHHHHHHHHHCCHHHHCEEEEEECEEEEEECCCC
PWERKLAVYRHAVWQDSGQWAFTTNEPSYVAVAQGMPLTRELEHFIHCIETRGEPRTSGE
HHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHH
EAIRVLRILTAGTVTHTKS
HHHHHHHHHHHCCEECCCC
>Mature Secondary Structure
MKPRIAVLGCGYWGSNHIRTLKALGALHAVSDANRARAEGFASEQDCLAIEPDQLFGRDD
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCEEECHHHHCCCCC
IDAIVMALPPQYHADLAVRAVESGKDVLVEKPIALTVADAERAVQAAKDNGRVFMVGHVL
CCEEEEECCCCCCCCCEEEEHHCCCEEEEECCEEEEECCHHHHHHHHCCCCCEEEEEHHH
RFHPAFETLKGLIDKGELGEVRYIHSHRLGLGKFHTENDALWDLAPHDLSMILAITGTEP
HHCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEECCCCCEEEECCCCEEEEEEEECCCC
VEVRGEGAALLDNLSDFAHLHMRFPNGLRSHLFTSRLNPYRERRLTVVGTKAMAVFDDVE
EEECCCCHHHHHHHHHHHHEEEECCCHHHHHHHHHHCCHHHHCEEEEEECEEEEEECCCC
PWERKLAVYRHAVWQDSGQWAFTTNEPSYVAVAQGMPLTRELEHFIHCIETRGEPRTSGE
HHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHH
EAIRVLRILTAGTVTHTKS
HHHHHHHHHHHCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]