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The map label for this gene is ydiF [H]

Identifier: 13472364

GI number: 13472364

Start: 2133904

End: 2134791

Strand: Direct

Name: ydiF [H]

Synonym: mlr2633

Alternate gene names: 13472364

Gene position: 2133904-2134791 (Clockwise)

Preceding gene: 13472363

Following gene: 13472365

Centisome position: 30.33

GC content: 65.09

Gene sequence:

>888_bases
ATGGCCCTGATCAGCCTCAAATCCCTCGGTGTCACCATGAGTGCGCCGCTCTTCTCCAAGCTCGACCTCACCATCGGCAG
TGGCGACCGCCTCGGCATCGTCGCCGCCAACGGCCGCGGCAAGTCGACCTTGCTCAAATGCCTGACCGGCGAGATGGAGC
CGACATCAGGCGACATCACCCGCACGCGCGGCCTGCGCGTCGGCCATGTCGAGCAGTCGGTTCCCCCTGCCCTTCTTAGC
CGCAGCTTTCATCAGGTGGTGGCCGACGCCTTGCCGCCGGAGCAGGCCGAAAGCGAGATGTGGCGCGTCGACGTCGTTCT
CGACTCTCTCGACGTGCCCGAGGTAATGCGCGAGCGGGAAATGCAGGCGCTGAGCGGCGGCTGGCAAAGGCTGGCGCTGA
TCGCTCGCGTCTGGGTCACCGATCCCGATGTGCTGCTGCTCGACGAACCGACCAACCATCTCGATCTTGCCCACATCAGC
CAGCTGGAAAGCTGGCTGAACGCGCTGCCGCGCGAAGTGCCCGTCGCCATCGCCAGCCATGACCGCGCCTTCCTCGACGC
CACCACCAACCGGACCCTGTTCCTGCGCCCGGAACAATCGCCAGTGTTTGCGCTGCCCTACTCCCGCGCCAGGCGGGCGC
TCGACGAGGCCGACGCCTCGACAGCGCGCAAGTTCGAGCGCGACATGAAGGTCGCCCAGCAGCTGCGAAAGCAGGCCGCC
AAGCTCAACAACATCGGCATCAATTCCGGCAGCGACCTTTTGACGGTGAAGACCAAGCAGCTCAAGGAACGGCCGAAAAA
CTGGAAGAGGCGGCGGTATCAGCACATCGCGAAAAATCGGCCGGAGCGATCCGGCTTGCCAATCGCGGCACCCACGCCAA
GGTGCTGA

Upstream 100 bases:

>100_bases
GTCTGCCCTTCGTGGTGCCGCAACGCCTAGCCTGATGGCCGGCACGCGCACCGTTCAAAGTGCATCCGGAGCTGTCTCCG
GCAAGACCAGAGAAATCCAA

Downstream 100 bases:

>100_bases
TCACCCTCGACGATGTGGCCGTGGAAACGCCCGACGGCACGCTGCTGTTCAGGACCGGCAAGCGCCACATCTGCCAGGGC
GACCGCATCGTACTGCTTGG

Product: ATP-binding protein of ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MALISLKSLGVTMSAPLFSKLDLTIGSGDRLGIVAANGRGKSTLLKCLTGEMEPTSGDITRTRGLRVGHVEQSVPPALLS
RSFHQVVADALPPEQAESEMWRVDVVLDSLDVPEVMREREMQALSGGWQRLALIARVWVTDPDVLLLDEPTNHLDLAHIS
QLESWLNALPREVPVAIASHDRAFLDATTNRTLFLRPEQSPVFALPYSRARRALDEADASTARKFERDMKVAQQLRKQAA
KLNNIGINSGSDLLTVKTKQLKERPKNWKRRRYQHIAKNRPERSGLPIAAPTPRC

Sequences:

>Translated_295_residues
MALISLKSLGVTMSAPLFSKLDLTIGSGDRLGIVAANGRGKSTLLKCLTGEMEPTSGDITRTRGLRVGHVEQSVPPALLS
RSFHQVVADALPPEQAESEMWRVDVVLDSLDVPEVMREREMQALSGGWQRLALIARVWVTDPDVLLLDEPTNHLDLAHIS
QLESWLNALPREVPVAIASHDRAFLDATTNRTLFLRPEQSPVFALPYSRARRALDEADASTARKFERDMKVAQQLRKQAA
KLNNIGINSGSDLLTVKTKQLKERPKNWKRRRYQHIAKNRPERSGLPIAAPTPRC
>Mature_294_residues
ALISLKSLGVTMSAPLFSKLDLTIGSGDRLGIVAANGRGKSTLLKCLTGEMEPTSGDITRTRGLRVGHVEQSVPPALLSR
SFHQVVADALPPEQAESEMWRVDVVLDSLDVPEVMREREMQALSGGWQRLALIARVWVTDPDVLLLDEPTNHLDLAHISQ
LESWLNALPREVPVAIASHDRAFLDATTNRTLFLRPEQSPVFALPYSRARRALDEADASTARKFERDMKVAQQLRKQAAK
LNNIGINSGSDLLTVKTKQLKERPKNWKRRRYQHIAKNRPERSGLPIAAPTPRC

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=261, Percent_Identity=29.1187739463602, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI10947137, Length=270, Percent_Identity=23.3333333333333, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI27881506, Length=270, Percent_Identity=23.3333333333333, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI10947135, Length=202, Percent_Identity=33.1683168316832, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI69354671, Length=202, Percent_Identity=33.1683168316832, Blast_Score=74, Evalue=1e-13,
Organism=Escherichia coli, GI1787182, Length=271, Percent_Identity=29.8892988929889, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787041, Length=205, Percent_Identity=28.780487804878, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789751, Length=208, Percent_Identity=30.2884615384615, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI2367384, Length=187, Percent_Identity=28.8770053475936, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787758, Length=184, Percent_Identity=29.3478260869565, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=252, Percent_Identity=26.5873015873016, Blast_Score=82, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17555318, Length=167, Percent_Identity=31.1377245508982, Blast_Score=70, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6320874, Length=174, Percent_Identity=32.7586206896552, Blast_Score=82, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6325030, Length=170, Percent_Identity=33.5294117647059, Blast_Score=81, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6321121, Length=191, Percent_Identity=28.7958115183246, Blast_Score=78, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6324314, Length=176, Percent_Identity=31.8181818181818, Blast_Score=76, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6323278, Length=176, Percent_Identity=31.25, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24641342, Length=194, Percent_Identity=34.5360824742268, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24666836, Length=170, Percent_Identity=33.5294117647059, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24642252, Length=166, Percent_Identity=31.9277108433735, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI18859989, Length=166, Percent_Identity=31.9277108433735, Blast_Score=71, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 32813; Mature: 32682

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALISLKSLGVTMSAPLFSKLDLTIGSGDRLGIVAANGRGKSTLLKCLTGEMEPTSGDIT
CCEEEEHHCCCEECCCCHHEEEEEECCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCC
RTRGLRVGHVEQSVPPALLSRSFHQVVADALPPEQAESEMWRVDVVLDSLDVPEVMRERE
HHCCCEECCCHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHEEEEEEECCCCCHHHHHHHH
MQALSGGWQRLALIARVWVTDPDVLLLDEPTNHLDLAHISQLESWLNALPREVPVAIASH
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHCCEEEECC
DRAFLDATTNRTLFLRPEQSPVFALPYSRARRALDEADASTARKFERDMKVAQQLRKQAA
CCEEEECCCCCEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLNNIGINSGSDLLTVKTKQLKERPKNWKRRRYQHIAKNRPERSGLPIAAPTPRC
HHHCCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ALISLKSLGVTMSAPLFSKLDLTIGSGDRLGIVAANGRGKSTLLKCLTGEMEPTSGDIT
CEEEEHHCCCEECCCCHHEEEEEECCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCC
RTRGLRVGHVEQSVPPALLSRSFHQVVADALPPEQAESEMWRVDVVLDSLDVPEVMRERE
HHCCCEECCCHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHEEEEEEECCCCCHHHHHHHH
MQALSGGWQRLALIARVWVTDPDVLLLDEPTNHLDLAHISQLESWLNALPREVPVAIASH
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHCCEEEECC
DRAFLDATTNRTLFLRPEQSPVFALPYSRARRALDEADASTARKFERDMKVAQQLRKQAA
CCEEEECCCCCEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLNNIGINSGSDLLTVKTKQLKERPKNWKRRRYQHIAKNRPERSGLPIAAPTPRC
HHHCCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]