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The map label for this gene is ypfJ [H]

Identifier: 13472259

GI number: 13472259

Start: 2024214

End: 2025134

Strand: Reverse

Name: ypfJ [H]

Synonym: mll2493

Alternate gene names: 13472259

Gene position: 2025134-2024214 (Counterclockwise)

Preceding gene: 13472261

Following gene: 13472258

Centisome position: 28.78

GC content: 64.17

Gene sequence:

>921_bases
ATGCTCTGGAGAGGCCGTCGTCAGAGTGACAATATCGAGGACGACCGCAGCGACAGCGGCGGCGGTGGGATCGGCGGCGG
CGGCGGGTTCCAAATTCCTATCGGCGGCCGGACCGGTGGCGGCGGCAGCATCCTCCTCGTCATCCTGGTGGTGATCGCGG
GATGGTATTTCGGCTTCGATCCCTCGGCGATCCTGGGCGGTGGCGATGGCGGCTTGCTGCCGGGTGGCGGTGGCCAGATA
TCGGACAATGGCGGCGGCCAGGGCAGCGGCACGGCACCTGCCAATGACGAGATGAAGCAGTTCGTCGCGACCGTTCTGGC
CGAAACAGAGGACACCTGGACCGGCATCTTCAAGTCGCAAGGCCTGACCTATGAGGACCCCAAGCTAGTGCTGTTTTCCG
GCCAGGTCCGCTCGGCCTGCGGCTTTGCCTCGGCGGCAGCCGGACCGTTCTATTGTCCGGGCGACCACAAGGTCTATCTC
GACATGACCTTCTTCCAGCAGCTCGACCAGCAGTTCGGCGCCTCGGGCGAGTTCGCCAGAGCCTATGTCGTCGCGCATGA
GGTCGGTCACCACGTGCAGAACCTCACCGGCATCATGTCCAAGTTCAACCAGATGCGGCAGGGCATGAGCGAGGCCGATG
CCAACCAGCTGTCGGTGCGCATCGAGCTGCAGGCCGACTGCTTCGCCGGCGTGTGGGCGCATTACACCGCGCAGAAGGGC
ATATTGGAGCAAGGCGACATCGAAAGCGCCCTGAACGCGGCCAAGCAAATCGGCGACGACACGCTGCAGAAGAGGACGCA
GGGCTATGTCGTGCCGGAAAGCTTCAACCACGGCACTTCGCAGCAGCGGCAGACCTGGCTGGCGCGCGGCTACAAGAGCG
GCAAGCTTTCGGACTGCAACACGATGAGCGGCCCGCTTTAA

Upstream 100 bases:

>100_bases
TCGAAAAACACTGTGACTTGGCGCAACCATTGGGATAATTGTTTGTTGGGTTGAGCCGGCCTTGCCGGAGCAACGAGGAA
GTTTATCACGGGGAGTTGCC

Downstream 100 bases:

>100_bases
GCACTTGTCCCACGCTAGCAGCCTGACGGCGAAGTTGCCGTCAGGGGGAGTCAGGATCAACGATTCCTGGCTGTTCCCGT
ATTGTTCCTTTTTGCGCGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLWRGRRQSDNIEDDRSDSGGGGIGGGGGFQIPIGGRTGGGGSILLVILVVIAGWYFGFDPSAILGGGDGGLLPGGGGQI
SDNGGGQGSGTAPANDEMKQFVATVLAETEDTWTGIFKSQGLTYEDPKLVLFSGQVRSACGFASAAAGPFYCPGDHKVYL
DMTFFQQLDQQFGASGEFARAYVVAHEVGHHVQNLTGIMSKFNQMRQGMSEADANQLSVRIELQADCFAGVWAHYTAQKG
ILEQGDIESALNAAKQIGDDTLQKRTQGYVVPESFNHGTSQQRQTWLARGYKSGKLSDCNTMSGPL

Sequences:

>Translated_306_residues
MLWRGRRQSDNIEDDRSDSGGGGIGGGGGFQIPIGGRTGGGGSILLVILVVIAGWYFGFDPSAILGGGDGGLLPGGGGQI
SDNGGGQGSGTAPANDEMKQFVATVLAETEDTWTGIFKSQGLTYEDPKLVLFSGQVRSACGFASAAAGPFYCPGDHKVYL
DMTFFQQLDQQFGASGEFARAYVVAHEVGHHVQNLTGIMSKFNQMRQGMSEADANQLSVRIELQADCFAGVWAHYTAQKG
ILEQGDIESALNAAKQIGDDTLQKRTQGYVVPESFNHGTSQQRQTWLARGYKSGKLSDCNTMSGPL
>Mature_306_residues
MLWRGRRQSDNIEDDRSDSGGGGIGGGGGFQIPIGGRTGGGGSILLVILVVIAGWYFGFDPSAILGGGDGGLLPGGGGQI
SDNGGGQGSGTAPANDEMKQFVATVLAETEDTWTGIFKSQGLTYEDPKLVLFSGQVRSACGFASAAAGPFYCPGDHKVYL
DMTFFQQLDQQFGASGEFARAYVVAHEVGHHVQNLTGIMSKFNQMRQGMSEADANQLSVRIELQADCFAGVWAHYTAQKG
ILEQGDIESALNAAKQIGDDTLQKRTQGYVVPESFNHGTSQQRQTWLARGYKSGKLSDCNTMSGPL

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=301, Percent_Identity=48.5049833887043, Blast_Score=285, Evalue=2e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 32346; Mature: 32346

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLWRGRRQSDNIEDDRSDSGGGGIGGGGGFQIPIGGRTGGGGSILLVILVVIAGWYFGFD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
PSAILGGGDGGLLPGGGGQISDNGGGQGSGTAPANDEMKQFVATVLAETEDTWTGIFKSQ
CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCC
GLTYEDPKLVLFSGQVRSACGFASAAAGPFYCPGDHKVYLDMTFFQQLDQQFGASGEFAR
CCCCCCCEEEEEECCHHHHHCHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCHHH
AYVVAHEVGHHVQNLTGIMSKFNQMRQGMSEADANQLSVRIELQADCFAGVWAHYTAQKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCEEEEEEEECCCHHHHHHHHHHHHCC
ILEQGDIESALNAAKQIGDDTLQKRTQGYVVPESFNHGTSQQRQTWLARGYKSGKLSDCN
CCCCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
TMSGPL
CCCCCC
>Mature Secondary Structure
MLWRGRRQSDNIEDDRSDSGGGGIGGGGGFQIPIGGRTGGGGSILLVILVVIAGWYFGFD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
PSAILGGGDGGLLPGGGGQISDNGGGQGSGTAPANDEMKQFVATVLAETEDTWTGIFKSQ
CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCC
GLTYEDPKLVLFSGQVRSACGFASAAAGPFYCPGDHKVYLDMTFFQQLDQQFGASGEFAR
CCCCCCCEEEEEECCHHHHHCHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCHHH
AYVVAHEVGHHVQNLTGIMSKFNQMRQGMSEADANQLSVRIELQADCFAGVWAHYTAQKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCEEEEEEEECCCHHHHHHHHHHHHCC
ILEQGDIESALNAAKQIGDDTLQKRTQGYVVPESFNHGTSQQRQTWLARGYKSGKLSDCN
CCCCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
TMSGPL
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]