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The map label for this gene is yijC [C]

Identifier: 13472185

GI number: 13472185

Start: 1950005

End: 1950622

Strand: Reverse

Name: yijC [C]

Synonym: mll2397

Alternate gene names: 13472185

Gene position: 1950622-1950005 (Counterclockwise)

Preceding gene: 13472195

Following gene: 13472182

Centisome position: 27.72

GC content: 61.17

Gene sequence:

>618_bases
ATGGCAAAGGTTGATTTGGCGCGCAGGGCGGAGATCGGACGCGAGAAGCGGGAAAGGACACGCACACTTATCGTGGAGGC
AGGGGCGATGCTGCTCGCGGAGCGGCCCCGCGAGGGCCTCACTGTGGATGCCGTGGTAGAGGCAGCAGGTGTCGCGAAGG
GCACGTTCTATTATCACTTCCAGAGCATCGATGAATTGGCCTCAGCAGTCGGCGAGAAACTCGGGGAGAGCTTTGACGCC
GTGCTGACGCCTGCGCGCCTGGAACTACAAGATCCAGTCGAACGCCTGACCTTTGCCTTCACGCGATTCTTGGAAAAGGC
GATCTCGGACTCCAACTGGGCCAGGCTGGTCGTTCAGAGTTCTCACTCACCGACGGAATTTGCGCGAGGGATCCGGAATA
ACCTCAAGGCGGATATTGCCGAAGCGATTGTTCAGGGCCGGCTGAGCCTGCGGGACGCAGAGTTGGCAGTCGACATCGTG
ATCGGCATATGGCTGCAGGTGACGCGCGGCATCCTCGAACGAGGCGCCCGGCCCGAATTGACAGGCCAGGCTGTCGAGGC
GGTGCTGCGCGCGCTTGGTTCATCGCAGTCAGAGCAGCGCAAGGCCACGAAGAAATGA

Upstream 100 bases:

>100_bases
CGAATTCGCCGGCTCAATTTCAATTTGCATCTTTAGGTCAAATCGACTATATGGTCAATATGAGATTTTCGTAATGGTGC
AATGCAAAAAGGTATGACGG

Downstream 100 bases:

>100_bases
CAGCGGTGGGCGAATGTCCGGCTTCTATGCGGTCCGGGTGCTGATATCCTCCCACCCGATCAGGATTTTCCGAGACCTTG
GTTTGAAGGGCAGCTTATGT

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MAKVDLARRAEIGREKRERTRTLIVEAGAMLLAERPREGLTVDAVVEAAGVAKGTFYYHFQSIDELASAVGEKLGESFDA
VLTPARLELQDPVERLTFAFTRFLEKAISDSNWARLVVQSSHSPTEFARGIRNNLKADIAEAIVQGRLSLRDAELAVDIV
IGIWLQVTRGILERGARPELTGQAVEAVLRALGSSQSEQRKATKK

Sequences:

>Translated_205_residues
MAKVDLARRAEIGREKRERTRTLIVEAGAMLLAERPREGLTVDAVVEAAGVAKGTFYYHFQSIDELASAVGEKLGESFDA
VLTPARLELQDPVERLTFAFTRFLEKAISDSNWARLVVQSSHSPTEFARGIRNNLKADIAEAIVQGRLSLRDAELAVDIV
IGIWLQVTRGILERGARPELTGQAVEAVLRALGSSQSEQRKATKK
>Mature_204_residues
AKVDLARRAEIGREKRERTRTLIVEAGAMLLAERPREGLTVDAVVEAAGVAKGTFYYHFQSIDELASAVGEKLGESFDAV
LTPARLELQDPVERLTFAFTRFLEKAISDSNWARLVVQSSHSPTEFARGIRNNLKADIAEAIVQGRLSLRDAELAVDIVI
GIWLQVTRGILERGARPELTGQAVEAVLRALGSSQSEQRKATKK

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22554; Mature: 22423

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKVDLARRAEIGREKRERTRTLIVEAGAMLLAERPREGLTVDAVVEAAGVAKGTFYYHF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHH
QSIDELASAVGEKLGESFDAVLTPARLELQDPVERLTFAFTRFLEKAISDSNWARLVVQS
HHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEC
SHSPTEFARGIRNNLKADIAEAIVQGRLSLRDAELAVDIVIGIWLQVTRGILERGARPEL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TGQAVEAVLRALGSSQSEQRKATKK
CHHHHHHHHHHHCCCCHHHHHCCCC
>Mature Secondary Structure 
AKVDLARRAEIGREKRERTRTLIVEAGAMLLAERPREGLTVDAVVEAAGVAKGTFYYHF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHH
QSIDELASAVGEKLGESFDAVLTPARLELQDPVERLTFAFTRFLEKAISDSNWARLVVQS
HHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEC
SHSPTEFARGIRNNLKADIAEAIVQGRLSLRDAELAVDIVIGIWLQVTRGILERGARPEL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TGQAVEAVLRALGSSQSEQRKATKK
CHHHHHHHHHHHCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA