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The map label for this gene is ydhC [H]

Identifier: 13472127

GI number: 13472127

Start: 1874204

End: 1874971

Strand: Reverse

Name: ydhC [H]

Synonym: mll2325

Alternate gene names: 13472127

Gene position: 1874971-1874204 (Counterclockwise)

Preceding gene: 13472134

Following gene: 13472126

Centisome position: 26.65

GC content: 62.63

Gene sequence:

>768_bases
ATGGAAATCGTGCGTGATATCGAGAAAGGCGTGTATTCACGGAAGGGGGAGCCGGCCTTGGCCGAGACGCGGGAATTTAA
AGCAGAGCCACCCGAGGGGATCGATCCTCTCGGCGCCTCGAGCGAGGGCGCCTCGCTTTATGAACTGATCAGGGAGGACA
TCATCGAGGGCCGGCTCGCCGCCAATGAGCGGCTCGTGGTTACCGATCTGGCCCGGCGTCACGGCACCTCGACCAATCCC
GTGCGCGAAGCTCTGCAGCTGTTGCGCGGCGAGGGTTTCGTCATCTTTCTCCCCAATCGCGGGGCGCGTGTGCGGCCCAT
AGATCAGGATTTTGTCCGCGATATCTACGAGATCGGTGTGCTCATCGAGCCGGCCCTGACGCGATGGTTCGTGAACATGG
CTACCGTCGAGGACATTGCCGAACTCGAACGTATCCAGGGCCTGATCGAAGAGAACAATTTTGCCGACACGTTCAGGCAC
AGCGAGCTGGACACGGCTTTCCACACCGTGATGTACCAGCGGCACTACAACCGCCATGCCGCCGAGCTTTGGTGGAAGCA
TCGCGAAGTGCTGCGCGCCGTGAGCCGGCGTTTCAATTTCACGCTCGCCCGGCGTGCCGCCATCATTCGCGAGCACCGCG
AGCTCATCGCACATGTGAAGGCGGGAAATGCCGACGAGGCAGCCGAACTCATCGCCCGCCATGTCGAGGGCTCCGGCCGG
CATGTCCTCGAACACATGCGCGCCCGCAACGCCGCCCGGGCAGGGTAG

Upstream 100 bases:

>100_bases
CGTCGGCTGCGGGGACATCTCCTCAAATGTATCCCTTCGAGCACTTTATACGTTTTCAGATCGCAGATTGCCTGTCAACG
CAACAAATCGTACATTGTTT

Downstream 100 bases:

>100_bases
AACAATCGGCCCGGAACACCGCTCTTCGGGTCATTCCAGATAAGGGTAGTTGAGAGATGAAAATCACGAGCATCCGGCCG
TGGCTGATCAAATCCGATGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MEIVRDIEKGVYSRKGEPALAETREFKAEPPEGIDPLGASSEGASLYELIREDIIEGRLAANERLVVTDLARRHGTSTNP
VREALQLLRGEGFVIFLPNRGARVRPIDQDFVRDIYEIGVLIEPALTRWFVNMATVEDIAELERIQGLIEENNFADTFRH
SELDTAFHTVMYQRHYNRHAAELWWKHREVLRAVSRRFNFTLARRAAIIREHRELIAHVKAGNADEAAELIARHVEGSGR
HVLEHMRARNAARAG

Sequences:

>Translated_255_residues
MEIVRDIEKGVYSRKGEPALAETREFKAEPPEGIDPLGASSEGASLYELIREDIIEGRLAANERLVVTDLARRHGTSTNP
VREALQLLRGEGFVIFLPNRGARVRPIDQDFVRDIYEIGVLIEPALTRWFVNMATVEDIAELERIQGLIEENNFADTFRH
SELDTAFHTVMYQRHYNRHAAELWWKHREVLRAVSRRFNFTLARRAAIIREHRELIAHVKAGNADEAAELIARHVEGSGR
HVLEHMRARNAARAG
>Mature_255_residues
MEIVRDIEKGVYSRKGEPALAETREFKAEPPEGIDPLGASSEGASLYELIREDIIEGRLAANERLVVTDLARRHGTSTNP
VREALQLLRGEGFVIFLPNRGARVRPIDQDFVRDIYEIGVLIEPALTRWFVNMATVEDIAELERIQGLIEENNFADTFRH
SELDTAFHTVMYQRHYNRHAAELWWKHREVLRAVSRRFNFTLARRAAIIREHRELIAHVKAGNADEAAELIARHVEGSGR
HVLEHMRARNAARAG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 29142; Mature: 29142

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIVRDIEKGVYSRKGEPALAETREFKAEPPEGIDPLGASSEGASLYELIREDIIEGRLA
CHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
ANERLVVTDLARRHGTSTNPVREALQLLRGEGFVIFLPNRGARVRPIDQDFVRDIYEIGV
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
LIEPALTRWFVNMATVEDIAELERIQGLIEENNFADTFRHSELDTAFHTVMYQRHYNRHA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AELWWKHREVLRAVSRRFNFTLARRAAIIREHRELIAHVKAGNADEAAELIARHVEGSGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCH
HVLEHMRARNAARAG
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MEIVRDIEKGVYSRKGEPALAETREFKAEPPEGIDPLGASSEGASLYELIREDIIEGRLA
CHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
ANERLVVTDLARRHGTSTNPVREALQLLRGEGFVIFLPNRGARVRPIDQDFVRDIYEIGV
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
LIEPALTRWFVNMATVEDIAELERIQGLIEENNFADTFRHSELDTAFHTVMYQRHYNRHA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AELWWKHREVLRAVSRRFNFTLARRAAIIREHRELIAHVKAGNADEAAELIARHVEGSGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCH
HVLEHMRARNAARAG
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]